Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0438 and Rru_A0439 are separated by 212 nucleotides Rru_A0439 and Rru_A0440 are separated by 16 nucleotides
Rru_A0438: Rru_A0438 - Multi-sensor Signal Transduction Histidine Kinase (NCBI), at 513,394 to 516,138
_A0438
Rru_A0439: Rru_A0439 - extracellular solute-binding protein, family 3 (NCBI), at 516,351 to 517,445
_A0439
Rru_A0440: Rru_A0440 - Xylose isomerase-like TIM barrel (NCBI), at 517,462 to 518,433
_A0440
Position (kb) 516
517
518 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 515.853 kb on + strand, within Rru_A0438 at 515.854 kb on - strand, within Rru_A0438 at 516.214 kb on + strand at 516.214 kb on + strand at 516.214 kb on + strand at 516.214 kb on + strand at 516.215 kb on - strand at 516.215 kb on - strand at 516.306 kb on - strand at 516.306 kb on - strand at 516.306 kb on - strand at 516.497 kb on + strand, within Rru_A0439 at 516.497 kb on + strand, within Rru_A0439 at 516.498 kb on - strand, within Rru_A0439 at 516.519 kb on + strand, within Rru_A0439 at 516.933 kb on - strand, within Rru_A0439 at 516.933 kb on - strand, within Rru_A0439 at 516.935 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439 at 517.189 kb on + strand, within Rru_A0439 at 517.332 kb on + strand, within Rru_A0439 at 517.333 kb on - strand, within Rru_A0439 at 517.443 kb on + strand at 517.444 kb on - strand at 517.463 kb on + strand at 517.463 kb on + strand at 517.463 kb on + strand at 517.464 kb on - strand at 517.464 kb on - strand at 517.464 kb on - strand at 517.464 kb on - strand at 517.493 kb on + strand at 517.493 kb on + strand at 517.929 kb on + strand, within Rru_A0440 at 517.929 kb on + strand, within Rru_A0440 at 518.055 kb on + strand, within Rru_A0440 at 518.056 kb on - strand, within Rru_A0440 at 518.056 kb on - strand, within Rru_A0440 at 518.383 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 515,853 + Rru_A0438 0.90 -0.9 515,854 - Rru_A0438 0.90 +0.0 516,214 + +0.0 516,214 + -0.5 516,214 + -0.4 516,214 + +0.0 516,215 - -1.6 516,215 - +0.0 516,306 - +0.0 516,306 - +0.0 516,306 - +0.0 516,497 + Rru_A0439 0.13 -0.2 516,497 + Rru_A0439 0.13 +3.2 516,498 - Rru_A0439 0.13 +0.0 516,519 + Rru_A0439 0.15 -1.3 516,933 - Rru_A0439 0.53 +2.8 516,933 - Rru_A0439 0.53 -0.7 516,935 - Rru_A0439 0.53 +0.8 517,000 - Rru_A0439 0.59 +1.0 517,000 - Rru_A0439 0.59 +0.1 517,000 - Rru_A0439 0.59 -0.7 517,000 - Rru_A0439 0.59 +0.0 517,189 + Rru_A0439 0.77 +0.7 517,332 + Rru_A0439 0.90 +0.0 517,333 - Rru_A0439 0.90 +0.5 517,443 + +0.0 517,444 - +1.6 517,463 + +0.8 517,463 + +0.0 517,463 + +0.0 517,464 - +3.5 517,464 - +0.3 517,464 - +0.0 517,464 - +0.0 517,493 + -2.5 517,493 + -0.6 517,929 + Rru_A0440 0.48 +6.3 517,929 + Rru_A0440 0.48 -1.2 518,055 + Rru_A0440 0.61 +0.4 518,056 - Rru_A0440 0.61 +0.0 518,056 - Rru_A0440 0.61 -0.7 518,383 - -1.2
Or see this region's nucleotide sequence