Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0388

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0386 and Rru_A0387 are separated by 75 nucleotidesRru_A0387 and Rru_A0388 are separated by 74 nucleotidesRru_A0388 and Rru_A0389 overlap by 59 nucleotidesRru_A0389 and Rru_A0390 are separated by 188 nucleotides Rru_A0386: Rru_A0386 - Transcriptional Regulator, ArsR family (NCBI), at 464,330 to 465,022 _A0386 Rru_A0387: Rru_A0387 - Antibiotic biosynthesis monooxygenase (NCBI), at 465,098 to 465,487 _A0387 Rru_A0388: Rru_A0388 - Protein of unknown function DUF6, transmembrane (NCBI), at 465,562 to 466,524 _A0388 Rru_A0389: Rru_A0389 - Antibiotic biosynthesis monooxygenase (NCBI), at 466,466 to 466,756 _A0389 Rru_A0390: Rru_A0390 - hypothetical protein (NCBI), at 466,945 to 467,925 _A0390 Position (kb) 465 466 467Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 464.622 kb on + strand, within Rru_A0386at 464.623 kb on - strand, within Rru_A0386at 464.623 kb on - strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.811 kb on + strand, within Rru_A0386at 464.811 kb on + strand, within Rru_A0386at 464.811 kb on + strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.867 kb on + strand, within Rru_A0386at 464.867 kb on + strand, within Rru_A0386at 464.867 kb on + strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.894 kb on + strand, within Rru_A0386at 464.895 kb on - strand, within Rru_A0386at 464.959 kb on + strandat 464.960 kb on - strandat 464.960 kb on - strandat 464.960 kb on - strandat 465.022 kb on + strandat 465.034 kb on - strandat 465.064 kb on - strandat 465.149 kb on + strand, within Rru_A0387at 465.149 kb on + strand, within Rru_A0387at 465.149 kb on + strand, within Rru_A0387at 465.150 kb on - strand, within Rru_A0387at 465.150 kb on - strand, within Rru_A0387at 465.150 kb on - strand, within Rru_A0387at 465.260 kb on + strand, within Rru_A0387at 465.354 kb on - strand, within Rru_A0387at 465.386 kb on + strand, within Rru_A0387at 465.386 kb on + strand, within Rru_A0387at 465.387 kb on - strand, within Rru_A0387at 465.486 kb on - strandat 465.486 kb on - strandat 465.579 kb on - strandat 465.634 kb on + strandat 465.634 kb on + strandat 465.634 kb on + strandat 465.634 kb on + strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.724 kb on - strand, within Rru_A0388at 465.724 kb on - strand, within Rru_A0388at 466.064 kb on - strand, within Rru_A0388at 466.064 kb on - strand, within Rru_A0388at 466.064 kb on - strand, within Rru_A0388at 466.267 kb on + strand, within Rru_A0388at 466.267 kb on + strand, within Rru_A0388at 466.268 kb on - strand, within Rru_A0388at 466.268 kb on - strand, within Rru_A0388at 466.268 kb on - strand, within Rru_A0388at 466.318 kb on + strand, within Rru_A0388at 466.319 kb on - strand, within Rru_A0388at 466.645 kb on - strand, within Rru_A0389at 466.645 kb on - strand, within Rru_A0389at 466.645 kb on - strand, within Rru_A0389at 466.715 kb on - strand, within Rru_A0389at 466.715 kb on - strand, within Rru_A0389at 466.750 kb on + strandat 466.750 kb on + strandat 466.750 kb on + strandat 466.864 kb on + strandat 466.864 kb on + strandat 466.865 kb on - strandat 466.865 kb on - strandat 466.984 kb on + strandat 466.984 kb on + strandat 466.984 kb on + strandat 466.985 kb on - strandat 466.985 kb on - strandat 466.985 kb on - strandat 466.985 kb on - strandat 467.017 kb on + strandat 467.017 kb on + strandat 467.018 kb on - strandat 467.018 kb on - strandat 467.029 kb on + strandat 467.029 kb on + strandat 467.029 kb on + strandat 467.030 kb on - strandat 467.030 kb on - strandat 467.049 kb on + strand, within Rru_A0390at 467.143 kb on + strand, within Rru_A0390at 467.143 kb on + strand, within Rru_A0390at 467.143 kb on + strand, within Rru_A0390at 467.143 kb on + strand, within Rru_A0390at 467.144 kb on - strand, within Rru_A0390at 467.144 kb on - strand, within Rru_A0390at 467.158 kb on + strand, within Rru_A0390at 467.159 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.331 kb on + strand, within Rru_A0390at 467.331 kb on + strand, within Rru_A0390at 467.335 kb on + strand, within Rru_A0390at 467.335 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.408 kb on - strand, within Rru_A0390at 467.408 kb on - strand, within Rru_A0390at 467.408 kb on - strand, within Rru_A0390at 467.449 kb on - strand, within Rru_A0390

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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464,622 + Rru_A0386 0.42 -0.6
464,623 - Rru_A0386 0.42 -2.4
464,623 - Rru_A0386 0.42 -1.7
464,682 + Rru_A0386 0.51 +0.0
464,682 + Rru_A0386 0.51 -0.8
464,682 + Rru_A0386 0.51 +6.4
464,682 + Rru_A0386 0.51 +0.7
464,682 + Rru_A0386 0.51 +0.0
464,682 + Rru_A0386 0.51 +0.7
464,682 + Rru_A0386 0.51 -0.3
464,683 - Rru_A0386 0.51 -1.0
464,683 - Rru_A0386 0.51 +0.0
464,683 - Rru_A0386 0.51 +0.0
464,683 - Rru_A0386 0.51 +0.0
464,683 - Rru_A0386 0.51 +0.0
464,683 - Rru_A0386 0.51 -0.7
464,683 - Rru_A0386 0.51 -2.0
464,683 - Rru_A0386 0.51 -0.0
464,683 - Rru_A0386 0.51 +1.3
464,683 - Rru_A0386 0.51 +6.0
464,811 + Rru_A0386 0.69 +0.0
464,811 + Rru_A0386 0.69 +0.6
464,811 + Rru_A0386 0.69 +0.0
464,812 - Rru_A0386 0.70 -0.1
464,812 - Rru_A0386 0.70 +5.4
464,812 - Rru_A0386 0.70 +2.1
464,812 - Rru_A0386 0.70 +0.0
464,812 - Rru_A0386 0.70 -1.3
464,867 + Rru_A0386 0.77 +0.0
464,867 + Rru_A0386 0.77 +0.0
464,867 + Rru_A0386 0.77 +0.0
464,868 - Rru_A0386 0.78 +2.3
464,868 - Rru_A0386 0.78 -0.3
464,868 - Rru_A0386 0.78 -0.5
464,868 - Rru_A0386 0.78 -1.0
464,894 + Rru_A0386 0.81 +0.0
464,895 - Rru_A0386 0.82 +0.5
464,959 + +0.0
464,960 - +3.2
464,960 - +0.8
464,960 - -1.0
465,022 + -1.8
465,034 - +0.6
465,064 - +0.0
465,149 + Rru_A0387 0.13 -1.3
465,149 + Rru_A0387 0.13 -1.6
465,149 + Rru_A0387 0.13 +0.0
465,150 - Rru_A0387 0.13 -0.5
465,150 - Rru_A0387 0.13 -0.1
465,150 - Rru_A0387 0.13 -1.0
465,260 + Rru_A0387 0.42 +0.0
465,354 - Rru_A0387 0.66 -1.3
465,386 + Rru_A0387 0.74 -1.8
465,386 + Rru_A0387 0.74 -2.0
465,387 - Rru_A0387 0.74 +0.7
465,486 - -1.0
465,486 - +1.7
465,579 - +0.6
465,634 + -0.2
465,634 + +0.0
465,634 + +1.7
465,634 + +3.2
465,635 - +0.0
465,635 - -0.2
465,635 - +5.8
465,635 - -1.1
465,635 - -1.5
465,724 - Rru_A0388 0.17 +0.0
465,724 - Rru_A0388 0.17 -0.6
466,064 - Rru_A0388 0.52 +0.0
466,064 - Rru_A0388 0.52 +0.0
466,064 - Rru_A0388 0.52 +0.0
466,267 + Rru_A0388 0.73 +0.0
466,267 + Rru_A0388 0.73 +0.0
466,268 - Rru_A0388 0.73 -0.5
466,268 - Rru_A0388 0.73 +0.0
466,268 - Rru_A0388 0.73 -0.3
466,318 + Rru_A0388 0.79 -1.5
466,319 - Rru_A0388 0.79 -1.2
466,645 - Rru_A0389 0.62 -2.6
466,645 - Rru_A0389 0.62 -1.6
466,645 - Rru_A0389 0.62 +1.7
466,715 - Rru_A0389 0.86 -0.4
466,715 - Rru_A0389 0.86 -0.4
466,750 + +0.0
466,750 + +0.0
466,750 + -0.7
466,864 + -0.8
466,864 + -1.8
466,865 - +0.3
466,865 - +0.8
466,984 + -1.5
466,984 + -1.0
466,984 + +0.0
466,985 - +0.0
466,985 - +0.0
466,985 - +0.0
466,985 - +3.3
467,017 + +1.2
467,017 + +0.0
467,018 - +0.0
467,018 - -0.2
467,029 + -0.9
467,029 + -1.4
467,029 + -0.5
467,030 - -0.6
467,030 - -0.3
467,049 + Rru_A0390 0.11 +2.8
467,143 + Rru_A0390 0.20 -1.2
467,143 + Rru_A0390 0.20 +6.7
467,143 + Rru_A0390 0.20 +0.3
467,143 + Rru_A0390 0.20 -1.1
467,144 - Rru_A0390 0.20 +0.0
467,144 - Rru_A0390 0.20 +0.0
467,158 + Rru_A0390 0.22 -0.9
467,159 - Rru_A0390 0.22 +0.0
467,200 - Rru_A0390 0.26 -0.8
467,200 - Rru_A0390 0.26 +0.4
467,200 - Rru_A0390 0.26 -0.1
467,200 - Rru_A0390 0.26 -0.9
467,200 - Rru_A0390 0.26 -1.6
467,200 - Rru_A0390 0.26 -1.1
467,200 - Rru_A0390 0.26 +0.2
467,331 + Rru_A0390 0.39 -0.9
467,331 + Rru_A0390 0.39 +0.0
467,335 + Rru_A0390 0.40 +0.9
467,335 + Rru_A0390 0.40 +0.4
467,407 + Rru_A0390 0.47 +0.0
467,407 + Rru_A0390 0.47 +0.0
467,407 + Rru_A0390 0.47 -0.9
467,407 + Rru_A0390 0.47 -1.0
467,407 + Rru_A0390 0.47 +0.0
467,407 + Rru_A0390 0.47 +4.0
467,407 + Rru_A0390 0.47 -1.2
467,407 + Rru_A0390 0.47 +0.1
467,407 + Rru_A0390 0.47 +0.0
467,408 - Rru_A0390 0.47 +1.4
467,408 - Rru_A0390 0.47 +0.0
467,408 - Rru_A0390 0.47 +1.4
467,449 - Rru_A0390 0.51 +0.9

Or see this region's nucleotide sequence