Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0356 and Rru_A0357 are separated by 244 nucleotides Rru_A0357 and Rru_A0358 are separated by 82 nucleotides Rru_A0358 and Rru_A0359 are separated by 56 nucleotides Rru_A0359 and Rru_A0360 overlap by 1 nucleotides
Rru_A0356: Rru_A0356 - Isocitrate dehydrogenase (NCBI), at 430,719 to 431,936
_A0356
Rru_A0357: Rru_A0357 - hypothetical protein (NCBI), at 432,181 to 432,777
_A0357
Rru_A0358: Rru_A0358 - Heme oxygenase (NCBI), at 432,860 to 433,519
_A0358
Rru_A0359: Rru_A0359 - Class II aldolase/adducin-like (NCBI), at 433,576 to 434,241
_A0359
Rru_A0360: Rru_A0360 - Initiation factor 2B alpha/beta/delta (NCBI), at 434,241 to 435,413
_A0360
Position (kb) 432
433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 432.042 kb on - strand at 432.042 kb on - strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.124 kb on - strand at 432.124 kb on - strand at 432.127 kb on + strand at 432.127 kb on + strand at 432.127 kb on + strand at 432.127 kb on + strand at 432.127 kb on + strand at 432.127 kb on + strand at 432.127 kb on + strand at 432.128 kb on - strand at 432.280 kb on - strand, within Rru_A0357 at 432.280 kb on - strand, within Rru_A0357 at 432.281 kb on + strand, within Rru_A0357 at 432.281 kb on + strand, within Rru_A0357 at 432.282 kb on - strand, within Rru_A0357 at 432.282 kb on - strand, within Rru_A0357 at 432.356 kb on + strand, within Rru_A0357 at 432.717 kb on - strand, within Rru_A0357 at 432.717 kb on - strand, within Rru_A0357 at 432.861 kb on + strand at 432.861 kb on + strand at 432.861 kb on + strand at 433.131 kb on + strand, within Rru_A0358 at 433.131 kb on + strand, within Rru_A0358 at 433.131 kb on + strand, within Rru_A0358 at 433.132 kb on - strand, within Rru_A0358 at 433.368 kb on + strand, within Rru_A0358 at 433.369 kb on - strand, within Rru_A0358 at 433.694 kb on + strand, within Rru_A0359 at 433.853 kb on + strand, within Rru_A0359 at 433.853 kb on + strand, within Rru_A0359 at 433.853 kb on + strand, within Rru_A0359 at 433.853 kb on + strand, within Rru_A0359 at 433.898 kb on + strand, within Rru_A0359 at 433.898 kb on + strand, within Rru_A0359 at 433.898 kb on + strand, within Rru_A0359 at 433.898 kb on + strand, within Rru_A0359 at 433.899 kb on - strand, within Rru_A0359 at 433.899 kb on - strand, within Rru_A0359 at 433.960 kb on - strand, within Rru_A0359 at 434.323 kb on + strand at 434.323 kb on + strand at 434.416 kb on + strand, within Rru_A0360
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 432,042 - +0.0 432,042 - +0.7 432,123 + -1.0 432,123 + +0.0 432,123 + -0.2 432,123 + +0.5 432,123 + +0.0 432,123 + -0.6 432,123 + -2.0 432,123 + +0.3 432,123 + -2.1 432,123 + -1.4 432,123 + +0.0 432,124 - +0.0 432,124 - +1.0 432,127 + -1.4 432,127 + -1.3 432,127 + -1.4 432,127 + -1.2 432,127 + +0.0 432,127 + -0.5 432,127 + +5.2 432,128 - +6.7 432,280 - Rru_A0357 0.17 +1.7 432,280 - Rru_A0357 0.17 +0.0 432,281 + Rru_A0357 0.17 +0.8 432,281 + Rru_A0357 0.17 +0.0 432,282 - Rru_A0357 0.17 +0.0 432,282 - Rru_A0357 0.17 +0.0 432,356 + Rru_A0357 0.29 +1.4 432,717 - Rru_A0357 0.90 +0.4 432,717 - Rru_A0357 0.90 -1.8 432,861 + +0.5 432,861 + -0.6 432,861 + -0.2 433,131 + Rru_A0358 0.41 -0.7 433,131 + Rru_A0358 0.41 -0.7 433,131 + Rru_A0358 0.41 +0.0 433,132 - Rru_A0358 0.41 +2.3 433,368 + Rru_A0358 0.77 -1.2 433,369 - Rru_A0358 0.77 -0.8 433,694 + Rru_A0359 0.18 +2.7 433,853 + Rru_A0359 0.42 -1.3 433,853 + Rru_A0359 0.42 +0.0 433,853 + Rru_A0359 0.42 +0.0 433,853 + Rru_A0359 0.42 -3.3 433,898 + Rru_A0359 0.48 +5.0 433,898 + Rru_A0359 0.48 -0.5 433,898 + Rru_A0359 0.48 -0.4 433,898 + Rru_A0359 0.48 +1.6 433,899 - Rru_A0359 0.48 +0.2 433,899 - Rru_A0359 0.48 -2.7 433,960 - Rru_A0359 0.58 +6.5 434,323 + +0.4 434,323 + +0.0 434,416 + Rru_A0360 0.15 +0.0
Or see this region's nucleotide sequence