Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0318

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0316 and Rru_A0317 are separated by 2 nucleotidesRru_A0317 and Rru_A0318 are separated by 8 nucleotidesRru_A0318 and Rru_A0319 overlap by 8 nucleotidesRru_A0319 and Rru_A0320 are separated by 13 nucleotides Rru_A0316: Rru_A0316 - NADH-ubiquinone oxidoreductase (NCBI), at 385,692 to 387,377 _A0316 Rru_A0317: Rru_A0317 - Respiratory-chain NADH dehydrogenase, subunit 1 (NCBI), at 387,380 to 388,282 _A0317 Rru_A0318: Rru_A0318 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 388,291 to 388,818 _A0318 Rru_A0319: Rru_A0319 - NADH-ubiquinone oxidoreductase, chain 4L (NCBI), at 388,811 to 389,476 _A0319 Rru_A0320: Rru_A0320 - NADH dehydrogenase (quinone) (NCBI), at 389,490 to 391,085 _A0320 Position (kb) 388 389Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 387.327 kb on + strandat 387.327 kb on + strandat 387.327 kb on + strandat 387.375 kb on + strandat 387.509 kb on + strand, within Rru_A0317at 387.509 kb on + strand, within Rru_A0317at 387.510 kb on - strand, within Rru_A0317at 387.680 kb on + strand, within Rru_A0317at 387.680 kb on + strand, within Rru_A0317at 387.680 kb on + strand, within Rru_A0317at 387.680 kb on + strand, within Rru_A0317at 387.680 kb on + strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.715 kb on - strand, within Rru_A0317at 387.741 kb on - strand, within Rru_A0317at 387.741 kb on - strand, within Rru_A0317at 387.741 kb on - strand, within Rru_A0317at 387.746 kb on + strand, within Rru_A0317at 387.746 kb on + strand, within Rru_A0317at 387.777 kb on + strand, within Rru_A0317at 387.778 kb on - strand, within Rru_A0317at 387.867 kb on - strand, within Rru_A0317at 387.867 kb on - strand, within Rru_A0317at 388.166 kb on - strand, within Rru_A0317at 388.352 kb on - strand, within Rru_A0318at 388.832 kb on + strandat 388.907 kb on + strand, within Rru_A0319at 388.908 kb on - strand, within Rru_A0319at 388.908 kb on - strand, within Rru_A0319at 388.980 kb on - strand, within Rru_A0319at 388.983 kb on - strand, within Rru_A0319at 388.983 kb on - strand, within Rru_A0319at 389.042 kb on + strand, within Rru_A0319at 389.042 kb on + strand, within Rru_A0319at 389.043 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.405 kb on + strand, within Rru_A0319at 389.405 kb on + strand, within Rru_A0319at 389.405 kb on + strand, within Rru_A0319at 389.405 kb on + strand, within Rru_A0319at 389.406 kb on - strand, within Rru_A0319at 389.406 kb on - strand, within Rru_A0319at 389.406 kb on - strand, within Rru_A0319at 389.455 kb on + strandat 389.455 kb on + strandat 389.506 kb on + strandat 389.507 kb on - strandat 389.509 kb on + strandat 389.510 kb on - strandat 389.510 kb on - strandat 389.519 kb on - strandat 389.519 kb on - strandat 389.553 kb on + strandat 389.554 kb on - strandat 389.799 kb on + strand, within Rru_A0320at 389.800 kb on - strand, within Rru_A0320

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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387,327 + -0.0
387,327 + +0.6
387,327 + -0.8
387,375 + -2.1
387,509 + Rru_A0317 0.14 +0.9
387,509 + Rru_A0317 0.14 -0.0
387,510 - Rru_A0317 0.14 +0.0
387,680 + Rru_A0317 0.33 -0.5
387,680 + Rru_A0317 0.33 -0.3
387,680 + Rru_A0317 0.33 +2.8
387,680 + Rru_A0317 0.33 -0.0
387,680 + Rru_A0317 0.33 +5.2
387,681 - Rru_A0317 0.33 -2.0
387,681 - Rru_A0317 0.33 -0.6
387,681 - Rru_A0317 0.33 +2.3
387,681 - Rru_A0317 0.33 -0.7
387,681 - Rru_A0317 0.33 -1.0
387,681 - Rru_A0317 0.33 +0.5
387,715 - Rru_A0317 0.37 -1.6
387,741 - Rru_A0317 0.40 +0.7
387,741 - Rru_A0317 0.40 -0.8
387,741 - Rru_A0317 0.40 -0.0
387,746 + Rru_A0317 0.41 -0.0
387,746 + Rru_A0317 0.41 -0.0
387,777 + Rru_A0317 0.44 +0.3
387,778 - Rru_A0317 0.44 -0.7
387,867 - Rru_A0317 0.54 -0.7
387,867 - Rru_A0317 0.54 -1.0
388,166 - Rru_A0317 0.87 -1.0
388,352 - Rru_A0318 0.12 -0.8
388,832 + -0.0
388,907 + Rru_A0319 0.14 -0.0
388,908 - Rru_A0319 0.15 -0.7
388,908 - Rru_A0319 0.15 +1.9
388,980 - Rru_A0319 0.25 -0.0
388,983 - Rru_A0319 0.26 -0.6
388,983 - Rru_A0319 0.26 +4.2
389,042 + Rru_A0319 0.35 +0.8
389,042 + Rru_A0319 0.35 +6.5
389,043 - Rru_A0319 0.35 +0.3
389,244 - Rru_A0319 0.65 +2.6
389,244 - Rru_A0319 0.65 +2.3
389,244 - Rru_A0319 0.65 -0.7
389,244 - Rru_A0319 0.65 -0.0
389,244 - Rru_A0319 0.65 +2.5
389,405 + Rru_A0319 0.89 -0.0
389,405 + Rru_A0319 0.89 -1.4
389,405 + Rru_A0319 0.89 -0.0
389,405 + Rru_A0319 0.89 -0.0
389,406 - Rru_A0319 0.89 +3.0
389,406 - Rru_A0319 0.89 -0.0
389,406 - Rru_A0319 0.89 -0.7
389,455 + -1.5
389,455 + +0.4
389,506 + -1.7
389,507 - -2.6
389,509 + -0.0
389,510 - -0.0
389,510 - -0.0
389,519 - -0.0
389,519 - -0.5
389,553 + -0.0
389,554 - -0.3
389,799 + Rru_A0320 0.19 -0.9
389,800 - Rru_A0320 0.19 -0.5

Or see this region's nucleotide sequence