Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0287 and Rru_A0288 are separated by 22 nucleotides Rru_A0288 and Rru_A0289 are separated by 169 nucleotides
Rru_A0287: Rru_A0287 - hypothetical protein (NCBI), at 352,515 to 353,675
_A0287
Rru_A0288: Rru_A0288 - 2,5-didehydrogluconate reductase (NCBI), at 353,698 to 354,522
_A0288
Rru_A0289: Rru_A0289 - NUDIX hydrolase (NCBI), at 354,692 to 355,840
_A0289
Position (kb) 353
354
355 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 353.199 kb on + strand, within Rru_A0287 at 353.199 kb on + strand, within Rru_A0287 at 353.221 kb on - strand, within Rru_A0287 at 353.316 kb on + strand, within Rru_A0287 at 353.644 kb on + strand at 353.644 kb on + strand at 353.645 kb on - strand at 353.673 kb on + strand at 353.973 kb on + strand, within Rru_A0288 at 353.973 kb on + strand, within Rru_A0288 at 353.973 kb on + strand, within Rru_A0288 at 353.974 kb on - strand, within Rru_A0288 at 353.974 kb on - strand, within Rru_A0288 at 353.974 kb on - strand, within Rru_A0288 at 353.974 kb on - strand, within Rru_A0288 at 353.975 kb on + strand, within Rru_A0288 at 353.975 kb on + strand, within Rru_A0288 at 353.975 kb on + strand, within Rru_A0288 at 353.975 kb on + strand, within Rru_A0288 at 353.975 kb on + strand, within Rru_A0288 at 353.975 kb on + strand, within Rru_A0288 at 353.976 kb on - strand, within Rru_A0288 at 353.976 kb on - strand, within Rru_A0288 at 353.976 kb on - strand, within Rru_A0288 at 354.044 kb on + strand, within Rru_A0288 at 354.045 kb on - strand, within Rru_A0288 at 354.230 kb on + strand, within Rru_A0288 at 354.231 kb on - strand, within Rru_A0288 at 354.231 kb on - strand, within Rru_A0288 at 354.231 kb on - strand, within Rru_A0288 at 354.325 kb on - strand, within Rru_A0288 at 354.383 kb on + strand, within Rru_A0288 at 354.411 kb on - strand, within Rru_A0288 at 354.551 kb on + strand at 354.927 kb on + strand, within Rru_A0289 at 354.927 kb on + strand, within Rru_A0289 at 354.927 kb on + strand, within Rru_A0289 at 354.928 kb on - strand, within Rru_A0289 at 355.029 kb on + strand, within Rru_A0289 at 355.029 kb on + strand, within Rru_A0289 at 355.030 kb on - strand, within Rru_A0289
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 353,199 + Rru_A0287 0.59 -0.3 353,199 + Rru_A0287 0.59 +6.5 353,221 - Rru_A0287 0.61 -1.6 353,316 + Rru_A0287 0.69 -1.8 353,644 + +4.8 353,644 + +1.3 353,645 - +0.0 353,673 + -0.3 353,973 + Rru_A0288 0.33 +0.0 353,973 + Rru_A0288 0.33 +1.2 353,973 + Rru_A0288 0.33 +0.0 353,974 - Rru_A0288 0.33 +1.3 353,974 - Rru_A0288 0.33 +0.0 353,974 - Rru_A0288 0.33 -0.7 353,974 - Rru_A0288 0.33 +0.2 353,975 + Rru_A0288 0.34 +4.4 353,975 + Rru_A0288 0.34 +0.0 353,975 + Rru_A0288 0.34 +0.2 353,975 + Rru_A0288 0.34 -1.9 353,975 + Rru_A0288 0.34 +0.0 353,975 + Rru_A0288 0.34 -0.0 353,976 - Rru_A0288 0.34 +0.0 353,976 - Rru_A0288 0.34 +0.3 353,976 - Rru_A0288 0.34 +0.0 354,044 + Rru_A0288 0.42 +0.7 354,045 - Rru_A0288 0.42 +0.0 354,230 + Rru_A0288 0.64 -0.2 354,231 - Rru_A0288 0.65 +0.0 354,231 - Rru_A0288 0.65 -0.5 354,231 - Rru_A0288 0.65 -1.7 354,325 - Rru_A0288 0.76 +2.7 354,383 + Rru_A0288 0.83 +1.4 354,411 - Rru_A0288 0.86 +3.7 354,551 + +0.0 354,927 + Rru_A0289 0.20 +0.5 354,927 + Rru_A0289 0.20 +3.1 354,927 + Rru_A0289 0.20 -1.0 354,928 - Rru_A0289 0.21 -1.6 355,029 + Rru_A0289 0.29 +0.0 355,029 + Rru_A0289 0.29 -0.7 355,030 - Rru_A0289 0.29 -0.4
Or see this region's nucleotide sequence