Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0197

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0196 and Rru_A0197 are separated by 53 nucleotidesRru_A0197 and Rru_A0198 are separated by 6 nucleotides Rru_A0196: Rru_A0196 - hypothetical protein (NCBI), at 243,725 to 244,675 _A0196 Rru_A0197: Rru_A0197 - hypothetical protein (NCBI), at 244,729 to 246,138 _A0197 Rru_A0198: Rru_A0198 - hypothetical protein (NCBI), at 246,145 to 248,130 _A0198 Position (kb) 244 245 246 247Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 244.850 kb on + strandat 244.922 kb on - strand, within Rru_A0197at 244.945 kb on + strand, within Rru_A0197at 244.945 kb on + strand, within Rru_A0197at 244.946 kb on - strand, within Rru_A0197at 244.948 kb on + strand, within Rru_A0197at 244.948 kb on + strand, within Rru_A0197at 244.948 kb on + strand, within Rru_A0197at 244.948 kb on + strand, within Rru_A0197at 244.948 kb on + strand, within Rru_A0197at 244.949 kb on - strand, within Rru_A0197at 244.949 kb on - strand, within Rru_A0197at 244.949 kb on - strand, within Rru_A0197at 244.949 kb on - strand, within Rru_A0197at 244.949 kb on - strand, within Rru_A0197at 244.949 kb on - strand, within Rru_A0197at 245.277 kb on + strand, within Rru_A0197at 245.277 kb on + strand, within Rru_A0197at 245.277 kb on + strand, within Rru_A0197at 245.278 kb on - strand, within Rru_A0197at 245.278 kb on - strand, within Rru_A0197at 245.278 kb on - strand, within Rru_A0197at 245.278 kb on - strand, within Rru_A0197at 245.278 kb on - strand, within Rru_A0197at 245.353 kb on + strand, within Rru_A0197at 245.451 kb on + strand, within Rru_A0197at 245.451 kb on + strand, within Rru_A0197at 245.452 kb on - strand, within Rru_A0197at 245.452 kb on - strand, within Rru_A0197at 245.452 kb on - strand, within Rru_A0197at 245.452 kb on - strand, within Rru_A0197at 245.542 kb on + strand, within Rru_A0197at 245.542 kb on + strand, within Rru_A0197at 245.542 kb on + strand, within Rru_A0197at 245.542 kb on + strand, within Rru_A0197at 245.542 kb on + strand, within Rru_A0197at 245.543 kb on - strand, within Rru_A0197at 245.544 kb on + strand, within Rru_A0197at 245.545 kb on - strand, within Rru_A0197at 245.545 kb on - strand, within Rru_A0197at 245.545 kb on - strand, within Rru_A0197at 245.545 kb on - strand, within Rru_A0197at 245.545 kb on - strand, within Rru_A0197at 245.586 kb on + strand, within Rru_A0197at 245.586 kb on + strand, within Rru_A0197at 245.586 kb on + strand, within Rru_A0197at 245.587 kb on - strand, within Rru_A0197at 245.710 kb on + strand, within Rru_A0197at 245.710 kb on + strand, within Rru_A0197at 245.711 kb on - strand, within Rru_A0197at 245.711 kb on - strand, within Rru_A0197at 245.743 kb on + strand, within Rru_A0197at 245.743 kb on + strand, within Rru_A0197at 245.743 kb on + strand, within Rru_A0197at 245.743 kb on + strand, within Rru_A0197at 245.743 kb on + strand, within Rru_A0197at 245.743 kb on + strand, within Rru_A0197at 245.744 kb on - strand, within Rru_A0197at 245.744 kb on - strand, within Rru_A0197at 245.744 kb on - strand, within Rru_A0197at 245.752 kb on + strand, within Rru_A0197at 245.752 kb on + strand, within Rru_A0197at 245.753 kb on - strand, within Rru_A0197at 245.800 kb on + strand, within Rru_A0197at 245.800 kb on + strand, within Rru_A0197at 246.534 kb on + strand, within Rru_A0198at 246.545 kb on - strand, within Rru_A0198at 246.545 kb on - strand, within Rru_A0198at 246.655 kb on + strand, within Rru_A0198at 246.656 kb on - strand, within Rru_A0198at 246.664 kb on + strand, within Rru_A0198at 247.048 kb on + strand, within Rru_A0198at 247.048 kb on + strand, within Rru_A0198at 247.048 kb on + strand, within Rru_A0198at 247.048 kb on + strand, within Rru_A0198at 247.048 kb on + strand, within Rru_A0198at 247.049 kb on - strand, within Rru_A0198at 247.049 kb on - strand, within Rru_A0198at 247.049 kb on - strand, within Rru_A0198at 247.114 kb on + strand, within Rru_A0198

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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244,850 + +4.2
244,922 - Rru_A0197 0.14 -0.0
244,945 + Rru_A0197 0.15 -0.0
244,945 + Rru_A0197 0.15 -0.5
244,946 - Rru_A0197 0.15 -0.0
244,948 + Rru_A0197 0.16 +4.0
244,948 + Rru_A0197 0.16 +1.2
244,948 + Rru_A0197 0.16 -0.0
244,948 + Rru_A0197 0.16 +0.1
244,948 + Rru_A0197 0.16 -0.4
244,949 - Rru_A0197 0.16 -0.0
244,949 - Rru_A0197 0.16 -1.6
244,949 - Rru_A0197 0.16 -1.3
244,949 - Rru_A0197 0.16 -2.4
244,949 - Rru_A0197 0.16 +0.4
244,949 - Rru_A0197 0.16 -0.0
245,277 + Rru_A0197 0.39 -0.0
245,277 + Rru_A0197 0.39 +2.2
245,277 + Rru_A0197 0.39 -0.2
245,278 - Rru_A0197 0.39 -0.7
245,278 - Rru_A0197 0.39 -0.6
245,278 - Rru_A0197 0.39 -0.0
245,278 - Rru_A0197 0.39 -0.0
245,278 - Rru_A0197 0.39 +0.6
245,353 + Rru_A0197 0.44 -0.0
245,451 + Rru_A0197 0.51 -0.1
245,451 + Rru_A0197 0.51 -0.8
245,452 - Rru_A0197 0.51 -0.0
245,452 - Rru_A0197 0.51 +0.7
245,452 - Rru_A0197 0.51 -2.8
245,452 - Rru_A0197 0.51 -0.0
245,542 + Rru_A0197 0.58 -0.0
245,542 + Rru_A0197 0.58 -0.0
245,542 + Rru_A0197 0.58 -0.0
245,542 + Rru_A0197 0.58 -0.7
245,542 + Rru_A0197 0.58 -0.2
245,543 - Rru_A0197 0.58 -0.0
245,544 + Rru_A0197 0.58 -0.8
245,545 - Rru_A0197 0.58 -2.5
245,545 - Rru_A0197 0.58 -0.6
245,545 - Rru_A0197 0.58 -0.6
245,545 - Rru_A0197 0.58 -0.6
245,545 - Rru_A0197 0.58 -0.9
245,586 + Rru_A0197 0.61 -0.9
245,586 + Rru_A0197 0.61 +3.8
245,586 + Rru_A0197 0.61 -1.3
245,587 - Rru_A0197 0.61 +1.0
245,710 + Rru_A0197 0.70 -0.6
245,710 + Rru_A0197 0.70 -0.0
245,711 - Rru_A0197 0.70 -1.8
245,711 - Rru_A0197 0.70 +1.6
245,743 + Rru_A0197 0.72 -0.7
245,743 + Rru_A0197 0.72 +1.6
245,743 + Rru_A0197 0.72 +6.4
245,743 + Rru_A0197 0.72 -1.8
245,743 + Rru_A0197 0.72 -1.5
245,743 + Rru_A0197 0.72 -0.0
245,744 - Rru_A0197 0.72 -0.0
245,744 - Rru_A0197 0.72 -0.9
245,744 - Rru_A0197 0.72 -1.3
245,752 + Rru_A0197 0.73 -0.0
245,752 + Rru_A0197 0.73 -1.1
245,753 - Rru_A0197 0.73 -0.0
245,800 + Rru_A0197 0.76 -0.3
245,800 + Rru_A0197 0.76 -2.2
246,534 + Rru_A0198 0.20 -0.9
246,545 - Rru_A0198 0.20 -0.3
246,545 - Rru_A0198 0.20 -1.2
246,655 + Rru_A0198 0.26 -1.0
246,656 - Rru_A0198 0.26 -0.5
246,664 + Rru_A0198 0.26 -1.0
247,048 + Rru_A0198 0.45 +0.4
247,048 + Rru_A0198 0.45 -0.0
247,048 + Rru_A0198 0.45 +2.0
247,048 + Rru_A0198 0.45 -0.4
247,048 + Rru_A0198 0.45 -0.0
247,049 - Rru_A0198 0.46 -1.0
247,049 - Rru_A0198 0.46 -0.7
247,049 - Rru_A0198 0.46 -0.0
247,114 + Rru_A0198 0.49 +1.2

Or see this region's nucleotide sequence