Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0180 and Rru_A0181 are separated by 28 nucleotides Rru_A0181 and Rru_A0182 overlap by 4 nucleotides Rru_A0182 and Rru_A0183 are separated by 155 nucleotides
Rru_A0180: Rru_A0180 - hypothetical protein (NCBI), at 214,303 to 215,160
_A0180
Rru_A0181: Rru_A0181 - hypothetical protein (NCBI), at 215,189 to 215,983
_A0181
Rru_A0182: Rru_A0182 - hypothetical protein (NCBI), at 215,980 to 217,629
_A0182
Rru_A0183: Rru_A0183 - Cold-shock DNA-binding domain protein (NCBI), at 217,785 to 220,433
_A0183
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 215.621 kb on - strand, within Rru_A0181 at 215.756 kb on + strand, within Rru_A0181 at 215.757 kb on - strand, within Rru_A0181 at 215.845 kb on - strand, within Rru_A0181 at 216.347 kb on - strand, within Rru_A0182 at 216.347 kb on - strand, within Rru_A0182 at 216.389 kb on + strand, within Rru_A0182 at 216.390 kb on - strand, within Rru_A0182 at 216.390 kb on - strand, within Rru_A0182 at 216.785 kb on + strand, within Rru_A0182 at 216.865 kb on + strand, within Rru_A0182 at 216.866 kb on - strand, within Rru_A0182 at 216.866 kb on - strand, within Rru_A0182 at 216.872 kb on - strand, within Rru_A0182 at 217.160 kb on - strand, within Rru_A0182 at 217.293 kb on + strand, within Rru_A0182 at 217.401 kb on - strand, within Rru_A0182 at 217.605 kb on + strand at 217.605 kb on + strand at 217.605 kb on + strand at 217.615 kb on + strand at 217.615 kb on + strand at 217.615 kb on + strand at 217.616 kb on - strand at 217.670 kb on - strand at 217.833 kb on + strand at 217.908 kb on - strand at 217.936 kb on + strand at 217.937 kb on - strand at 217.937 kb on - strand at 217.950 kb on + strand at 217.951 kb on - strand at 217.952 kb on + strand at 217.952 kb on + strand at 217.953 kb on - strand at 217.960 kb on + strand at 217.960 kb on + strand at 217.961 kb on - strand at 217.961 kb on - strand at 217.961 kb on - strand at 218.186 kb on + strand, within Rru_A0183 at 218.187 kb on - strand, within Rru_A0183 at 218.187 kb on - strand, within Rru_A0183 at 218.188 kb on + strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.189 kb on - strand, within Rru_A0183 at 218.209 kb on + strand, within Rru_A0183 at 218.209 kb on + strand, within Rru_A0183 at 218.210 kb on - strand, within Rru_A0183 at 218.210 kb on - strand, within Rru_A0183 at 218.210 kb on - strand, within Rru_A0183 at 218.210 kb on - strand, within Rru_A0183 at 218.267 kb on + strand, within Rru_A0183 at 218.267 kb on + strand, within Rru_A0183 at 218.267 kb on + strand, within Rru_A0183 at 218.268 kb on - strand, within Rru_A0183 at 218.270 kb on - strand, within Rru_A0183 at 218.352 kb on - strand, within Rru_A0183 at 218.352 kb on - strand, within Rru_A0183
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 215,621 - Rru_A0181 0.54 -0.0 215,756 + Rru_A0181 0.71 +0.7 215,757 - Rru_A0181 0.71 -0.0 215,845 - Rru_A0181 0.83 -2.8 216,347 - Rru_A0182 0.22 +2.3 216,347 - Rru_A0182 0.22 -1.6 216,389 + Rru_A0182 0.25 +0.1 216,390 - Rru_A0182 0.25 +2.4 216,390 - Rru_A0182 0.25 -0.0 216,785 + Rru_A0182 0.49 -0.7 216,865 + Rru_A0182 0.54 +1.2 216,866 - Rru_A0182 0.54 -0.0 216,866 - Rru_A0182 0.54 +0.3 216,872 - Rru_A0182 0.54 +0.3 217,160 - Rru_A0182 0.72 -0.7 217,293 + Rru_A0182 0.80 -0.0 217,401 - Rru_A0182 0.86 -0.0 217,605 + -0.0 217,605 + -0.0 217,605 + -1.1 217,615 + -0.0 217,615 + -0.8 217,615 + +0.7 217,616 - -0.0 217,670 - -1.0 217,833 + -0.0 217,908 - -0.9 217,936 + -0.6 217,937 - -0.0 217,937 - -1.1 217,950 + +3.4 217,951 - -1.3 217,952 + -1.0 217,952 + +7.3 217,953 - +1.2 217,960 + -0.9 217,960 + -0.4 217,961 - -0.0 217,961 - -0.0 217,961 - -1.0 218,186 + Rru_A0183 0.15 -0.3 218,187 - Rru_A0183 0.15 +1.1 218,187 - Rru_A0183 0.15 -0.0 218,188 + Rru_A0183 0.15 +0.4 218,189 - Rru_A0183 0.15 -1.2 218,189 - Rru_A0183 0.15 +0.2 218,189 - Rru_A0183 0.15 -0.4 218,189 - Rru_A0183 0.15 +0.9 218,189 - Rru_A0183 0.15 -0.1 218,189 - Rru_A0183 0.15 -0.0 218,189 - Rru_A0183 0.15 -0.0 218,189 - Rru_A0183 0.15 -0.4 218,209 + Rru_A0183 0.16 -0.0 218,209 + Rru_A0183 0.16 -0.5 218,210 - Rru_A0183 0.16 -0.0 218,210 - Rru_A0183 0.16 -1.1 218,210 - Rru_A0183 0.16 -0.7 218,210 - Rru_A0183 0.16 +3.4 218,267 + Rru_A0183 0.18 -1.6 218,267 + Rru_A0183 0.18 -0.0 218,267 + Rru_A0183 0.18 -0.0 218,268 - Rru_A0183 0.18 -0.2 218,270 - Rru_A0183 0.18 -0.0 218,352 - Rru_A0183 0.21 -0.0 218,352 - Rru_A0183 0.21 +0.1
Or see this region's nucleotide sequence