Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0178

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0177 and Rru_A0178 are separated by 222 nucleotidesRru_A0178 and Rru_A0179 are separated by 16 nucleotides Rru_A0177: Rru_A0177 - Lytic transglycosylase, catalytic (NCBI), at 210,683 to 211,045 _A0177 Rru_A0178: Rru_A0178 - CRISPR-associated protein Cas2, putative (NCBI), at 211,268 to 211,576 _A0178 Rru_A0179: Rru_A0179 - Protein of unknown function DUF83 (NCBI), at 211,593 to 213,335 _A0179 Position (kb) 211 212Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 210.684 kb on + strandat 210.684 kb on + strandat 210.684 kb on + strandat 210.711 kb on + strandat 210.711 kb on + strandat 210.711 kb on + strandat 211.040 kb on - strandat 211.040 kb on - strandat 211.164 kb on + strandat 211.164 kb on + strandat 211.164 kb on + strandat 211.164 kb on + strandat 211.358 kb on + strand, within Rru_A0178at 211.358 kb on + strand, within Rru_A0178at 211.359 kb on - strand, within Rru_A0178at 211.359 kb on - strand, within Rru_A0178at 211.359 kb on - strand, within Rru_A0178at 211.359 kb on - strand, within Rru_A0178at 211.359 kb on - strand, within Rru_A0178at 211.530 kb on + strand, within Rru_A0178at 211.530 kb on + strand, within Rru_A0178at 211.530 kb on + strand, within Rru_A0178at 211.531 kb on - strand, within Rru_A0178at 211.531 kb on - strand, within Rru_A0178at 211.542 kb on + strand, within Rru_A0178at 211.542 kb on + strand, within Rru_A0178at 211.543 kb on - strand, within Rru_A0178at 211.606 kb on + strandat 211.606 kb on + strandat 211.606 kb on + strandat 211.606 kb on + strandat 211.607 kb on - strandat 211.607 kb on - strandat 211.738 kb on + strandat 211.739 kb on - strandat 211.795 kb on + strand, within Rru_A0179at 211.796 kb on - strand, within Rru_A0179at 211.796 kb on - strand, within Rru_A0179at 211.830 kb on + strand, within Rru_A0179at 211.831 kb on - strand, within Rru_A0179at 211.924 kb on + strand, within Rru_A0179at 211.924 kb on + strand, within Rru_A0179at 211.924 kb on + strand, within Rru_A0179at 211.925 kb on - strand, within Rru_A0179at 211.925 kb on - strand, within Rru_A0179at 211.971 kb on + strand, within Rru_A0179at 211.993 kb on + strand, within Rru_A0179at 211.993 kb on + strand, within Rru_A0179at 211.993 kb on + strand, within Rru_A0179at 211.994 kb on - strand, within Rru_A0179at 211.994 kb on - strand, within Rru_A0179at 212.113 kb on + strand, within Rru_A0179at 212.113 kb on + strand, within Rru_A0179at 212.332 kb on + strand, within Rru_A0179at 212.333 kb on - strand, within Rru_A0179at 212.493 kb on + strand, within Rru_A0179at 212.493 kb on + strand, within Rru_A0179at 212.494 kb on - strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.550 kb on - strand, within Rru_A0179at 212.550 kb on - strand, within Rru_A0179at 212.550 kb on - strand, within Rru_A0179at 212.550 kb on - strand, within Rru_A0179at 212.550 kb on - strand, within Rru_A0179at 212.552 kb on - strand, within Rru_A0179at 212.552 kb on - strand, within Rru_A0179at 212.552 kb on - strand, within Rru_A0179

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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210,684 + -1.0
210,684 + -0.0
210,684 + -0.1
210,711 + -0.0
210,711 + +3.7
210,711 + -1.0
211,040 - -0.2
211,040 - -0.5
211,164 + -0.0
211,164 + -0.0
211,164 + -1.5
211,164 + -0.0
211,358 + Rru_A0178 0.29 -0.0
211,358 + Rru_A0178 0.29 -0.0
211,359 - Rru_A0178 0.29 -1.0
211,359 - Rru_A0178 0.29 +0.3
211,359 - Rru_A0178 0.29 -0.1
211,359 - Rru_A0178 0.29 +1.0
211,359 - Rru_A0178 0.29 -0.8
211,530 + Rru_A0178 0.85 -0.7
211,530 + Rru_A0178 0.85 -0.0
211,530 + Rru_A0178 0.85 -0.0
211,531 - Rru_A0178 0.85 -0.0
211,531 - Rru_A0178 0.85 +1.3
211,542 + Rru_A0178 0.89 -0.4
211,542 + Rru_A0178 0.89 -0.0
211,543 - Rru_A0178 0.89 -0.4
211,606 + -0.0
211,606 + -0.5
211,606 + +0.5
211,606 + -1.4
211,607 - -1.9
211,607 - -0.4
211,738 + -0.7
211,739 - +0.4
211,795 + Rru_A0179 0.12 -0.0
211,796 - Rru_A0179 0.12 -0.4
211,796 - Rru_A0179 0.12 -0.0
211,830 + Rru_A0179 0.14 -0.2
211,831 - Rru_A0179 0.14 -0.0
211,924 + Rru_A0179 0.19 +1.2
211,924 + Rru_A0179 0.19 +1.6
211,924 + Rru_A0179 0.19 -0.0
211,925 - Rru_A0179 0.19 -0.0
211,925 - Rru_A0179 0.19 -0.2
211,971 + Rru_A0179 0.22 -0.0
211,993 + Rru_A0179 0.23 -2.0
211,993 + Rru_A0179 0.23 -0.0
211,993 + Rru_A0179 0.23 -0.3
211,994 - Rru_A0179 0.23 +5.7
211,994 - Rru_A0179 0.23 +0.8
212,113 + Rru_A0179 0.30 -1.0
212,113 + Rru_A0179 0.30 -0.8
212,332 + Rru_A0179 0.42 +0.4
212,333 - Rru_A0179 0.42 -1.9
212,493 + Rru_A0179 0.52 -0.4
212,493 + Rru_A0179 0.52 +0.7
212,494 - Rru_A0179 0.52 +2.2
212,549 + Rru_A0179 0.55 -1.4
212,549 + Rru_A0179 0.55 -1.2
212,549 + Rru_A0179 0.55 -0.0
212,549 + Rru_A0179 0.55 +6.0
212,549 + Rru_A0179 0.55 -0.0
212,549 + Rru_A0179 0.55 +1.6
212,549 + Rru_A0179 0.55 -0.0
212,549 + Rru_A0179 0.55 -0.0
212,549 + Rru_A0179 0.55 -1.4
212,550 - Rru_A0179 0.55 -0.4
212,550 - Rru_A0179 0.55 -0.0
212,550 - Rru_A0179 0.55 -0.0
212,550 - Rru_A0179 0.55 -0.0
212,550 - Rru_A0179 0.55 +0.5
212,552 - Rru_A0179 0.55 -0.0
212,552 - Rru_A0179 0.55 +0.8
212,552 - Rru_A0179 0.55 +0.3

Or see this region's nucleotide sequence