Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0142 and Rru_A0143 are separated by 78 nucleotides Rru_A0143 and Rru_A0144 overlap by 14 nucleotides Rru_A0144 and Rru_A0145 are separated by 156 nucleotides Rru_A0145 and Rru_A0146 are separated by 109 nucleotides
Rru_A0142: Rru_A0142 - Putative cyclase (NCBI), at 165,819 to 166,781
_A0142
Rru_A0143: Rru_A0143 - GCN5-related N-acetyltransferase (NCBI), at 166,860 to 167,525
_A0143
Rru_A0144: Rru_A0144 - NADH:flavin oxidoreductase/NADH oxidase (NCBI), at 167,512 to 168,615
_A0144
Rru_A0145: Rru_A0145 - Transcriptional Regulator, TetR family (NCBI), at 168,772 to 169,380
_A0145
Rru_A0146: Rru_A0146 - Inorganic diphosphatase (NCBI), at 169,490 to 170,029
_A0146
Position (kb) 167
168
169 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 166.529 kb on - strand, within Rru_A0142 at 166.630 kb on + strand, within Rru_A0142 at 166.630 kb on + strand, within Rru_A0142 at 166.630 kb on + strand, within Rru_A0142 at 166.631 kb on - strand, within Rru_A0142 at 166.631 kb on - strand, within Rru_A0142 at 166.825 kb on + strand at 166.826 kb on - strand at 166.826 kb on - strand at 166.827 kb on + strand at 166.828 kb on - strand at 166.828 kb on - strand at 166.828 kb on - strand at 166.828 kb on - strand at 166.878 kb on + strand at 166.879 kb on - strand at 166.945 kb on - strand, within Rru_A0143 at 166.945 kb on - strand, within Rru_A0143 at 166.945 kb on - strand, within Rru_A0143 at 166.945 kb on - strand, within Rru_A0143 at 166.945 kb on - strand, within Rru_A0143 at 166.945 kb on - strand, within Rru_A0143 at 167.009 kb on + strand, within Rru_A0143 at 167.009 kb on + strand, within Rru_A0143 at 167.009 kb on + strand, within Rru_A0143 at 167.010 kb on - strand, within Rru_A0143 at 167.010 kb on - strand, within Rru_A0143 at 167.148 kb on + strand, within Rru_A0143 at 167.148 kb on + strand, within Rru_A0143 at 167.148 kb on + strand, within Rru_A0143 at 167.148 kb on + strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.153 kb on + strand, within Rru_A0143 at 167.154 kb on - strand, within Rru_A0143 at 167.200 kb on + strand, within Rru_A0143 at 167.513 kb on + strand at 167.561 kb on + strand at 167.561 kb on + strand at 167.562 kb on - strand at 167.562 kb on - strand at 167.627 kb on + strand, within Rru_A0144 at 167.627 kb on + strand, within Rru_A0144 at 167.628 kb on - strand, within Rru_A0144 at 167.628 kb on - strand, within Rru_A0144 at 167.821 kb on + strand, within Rru_A0144 at 167.821 kb on + strand, within Rru_A0144 at 167.821 kb on + strand, within Rru_A0144 at 167.821 kb on + strand, within Rru_A0144 at 167.822 kb on - strand, within Rru_A0144 at 167.822 kb on - strand, within Rru_A0144 at 167.871 kb on + strand, within Rru_A0144 at 167.872 kb on - strand, within Rru_A0144 at 168.014 kb on + strand, within Rru_A0144 at 168.014 kb on + strand, within Rru_A0144 at 168.015 kb on - strand, within Rru_A0144 at 168.065 kb on + strand, within Rru_A0144 at 168.066 kb on - strand, within Rru_A0144 at 168.530 kb on + strand at 168.737 kb on - strand at 168.737 kb on - strand at 168.850 kb on + strand, within Rru_A0145 at 169.082 kb on + strand, within Rru_A0145 at 169.082 kb on + strand, within Rru_A0145 at 169.169 kb on + strand, within Rru_A0145 at 169.169 kb on + strand, within Rru_A0145 at 169.170 kb on - strand, within Rru_A0145 at 169.170 kb on - strand, within Rru_A0145 at 169.218 kb on + strand, within Rru_A0145 at 169.218 kb on + strand, within Rru_A0145 at 169.218 kb on + strand, within Rru_A0145 at 169.218 kb on + strand, within Rru_A0145 at 169.219 kb on - strand, within Rru_A0145 at 169.219 kb on - strand, within Rru_A0145 at 169.220 kb on + strand, within Rru_A0145 at 169.220 kb on + strand, within Rru_A0145 at 169.220 kb on + strand, within Rru_A0145 at 169.220 kb on + strand, within Rru_A0145 at 169.220 kb on + strand, within Rru_A0145 at 169.221 kb on - strand, within Rru_A0145 at 169.221 kb on - strand, within Rru_A0145 at 169.221 kb on - strand, within Rru_A0145
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 166,529 - Rru_A0142 0.74 -0.2 166,630 + Rru_A0142 0.84 -0.3 166,630 + Rru_A0142 0.84 -0.0 166,630 + Rru_A0142 0.84 +1.0 166,631 - Rru_A0142 0.84 -1.7 166,631 - Rru_A0142 0.84 +0.1 166,825 + +0.1 166,826 - -2.5 166,826 - -0.0 166,827 + -0.0 166,828 - -2.5 166,828 - -1.0 166,828 - -1.4 166,828 - +1.6 166,878 + -0.0 166,879 - -0.0 166,945 - Rru_A0143 0.13 -0.0 166,945 - Rru_A0143 0.13 +0.4 166,945 - Rru_A0143 0.13 -1.0 166,945 - Rru_A0143 0.13 -2.0 166,945 - Rru_A0143 0.13 -0.0 166,945 - Rru_A0143 0.13 -1.4 167,009 + Rru_A0143 0.22 -0.0 167,009 + Rru_A0143 0.22 +5.6 167,009 + Rru_A0143 0.22 -0.4 167,010 - Rru_A0143 0.23 -0.1 167,010 - Rru_A0143 0.23 -0.8 167,148 + Rru_A0143 0.43 -0.0 167,148 + Rru_A0143 0.43 +3.8 167,148 + Rru_A0143 0.43 -0.0 167,148 + Rru_A0143 0.43 -0.0 167,149 - Rru_A0143 0.43 -0.0 167,149 - Rru_A0143 0.43 -0.0 167,149 - Rru_A0143 0.43 -0.0 167,149 - Rru_A0143 0.43 -0.0 167,149 - Rru_A0143 0.43 -0.0 167,149 - Rru_A0143 0.43 +0.2 167,149 - Rru_A0143 0.43 -1.2 167,149 - Rru_A0143 0.43 -0.0 167,153 + Rru_A0143 0.44 +3.8 167,154 - Rru_A0143 0.44 -0.5 167,200 + Rru_A0143 0.51 -0.3 167,513 + -0.0 167,561 + +6.3 167,561 + -0.0 167,562 - +0.0 167,562 - -0.3 167,627 + Rru_A0144 0.10 -0.0 167,627 + Rru_A0144 0.10 -1.2 167,628 - Rru_A0144 0.11 +0.5 167,628 - Rru_A0144 0.11 -0.0 167,821 + Rru_A0144 0.28 -2.8 167,821 + Rru_A0144 0.28 -0.3 167,821 + Rru_A0144 0.28 -0.8 167,821 + Rru_A0144 0.28 +3.0 167,822 - Rru_A0144 0.28 -0.0 167,822 - Rru_A0144 0.28 -0.0 167,871 + Rru_A0144 0.33 -0.5 167,872 - Rru_A0144 0.33 +1.8 168,014 + Rru_A0144 0.45 -1.0 168,014 + Rru_A0144 0.45 +1.2 168,015 - Rru_A0144 0.46 -0.7 168,065 + Rru_A0144 0.50 +1.3 168,066 - Rru_A0144 0.50 -1.4 168,530 + +5.2 168,737 - +0.8 168,737 - -0.0 168,850 + Rru_A0145 0.13 -0.0 169,082 + Rru_A0145 0.51 +7.6 169,082 + Rru_A0145 0.51 +0.2 169,169 + Rru_A0145 0.65 -0.0 169,169 + Rru_A0145 0.65 -0.8 169,170 - Rru_A0145 0.65 -0.6 169,170 - Rru_A0145 0.65 -0.0 169,218 + Rru_A0145 0.73 +1.1 169,218 + Rru_A0145 0.73 +1.2 169,218 + Rru_A0145 0.73 -1.2 169,218 + Rru_A0145 0.73 -0.9 169,219 - Rru_A0145 0.73 -0.4 169,219 - Rru_A0145 0.73 -0.0 169,220 + Rru_A0145 0.74 -0.0 169,220 + Rru_A0145 0.74 -0.3 169,220 + Rru_A0145 0.74 +6.9 169,220 + Rru_A0145 0.74 +1.1 169,220 + Rru_A0145 0.74 +6.3 169,221 - Rru_A0145 0.74 -0.8 169,221 - Rru_A0145 0.74 +2.8 169,221 - Rru_A0145 0.74 -0.0
Or see this region's nucleotide sequence