Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0130 and Rru_A0131 are separated by 246 nucleotides Rru_A0131 and Rru_A0132 are separated by 19 nucleotides
Rru_A0130: Rru_A0130 - chemotaxis sensory transducer (NCBI), at 151,454 to 152,929
_A0130
Rru_A0131: Rru_A0131 - Response regulator receiver (CheY) and unknown domain protein (NCBI), at 153,176 to 154,189
_A0131
Rru_A0132: Rru_A0132 - Peptidase S13, D-Ala-D-Ala carboxypeptidase C (NCBI), at 154,209 to 155,795
_A0132
Position (kb) 153
154
155 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 152.535 kb on + strand, within Rru_A0130 at 152.562 kb on + strand, within Rru_A0130 at 152.562 kb on + strand, within Rru_A0130 at 152.563 kb on - strand, within Rru_A0130 at 152.563 kb on - strand, within Rru_A0130 at 152.574 kb on + strand, within Rru_A0130 at 152.993 kb on + strand at 152.993 kb on + strand at 153.020 kb on + strand at 153.020 kb on + strand at 153.020 kb on + strand at 153.020 kb on + strand at 153.021 kb on - strand at 153.021 kb on - strand at 153.022 kb on + strand at 153.022 kb on + strand at 153.022 kb on + strand at 153.023 kb on - strand at 153.032 kb on + strand at 153.043 kb on + strand at 153.057 kb on + strand at 153.057 kb on + strand at 153.058 kb on - strand at 153.069 kb on + strand at 153.138 kb on + strand at 153.138 kb on + strand at 153.138 kb on + strand at 153.138 kb on + strand at 153.139 kb on - strand at 153.139 kb on - strand at 153.139 kb on - strand at 153.139 kb on - strand at 153.151 kb on - strand at 153.151 kb on - strand at 153.151 kb on - strand at 153.151 kb on - strand at 153.347 kb on + strand, within Rru_A0131 at 153.347 kb on + strand, within Rru_A0131 at 153.347 kb on + strand, within Rru_A0131 at 153.347 kb on + strand, within Rru_A0131 at 153.348 kb on - strand, within Rru_A0131 at 153.356 kb on + strand, within Rru_A0131 at 153.507 kb on + strand, within Rru_A0131 at 153.507 kb on + strand, within Rru_A0131 at 153.507 kb on + strand, within Rru_A0131 at 153.508 kb on - strand, within Rru_A0131 at 153.508 kb on - strand, within Rru_A0131 at 153.557 kb on + strand, within Rru_A0131 at 153.557 kb on + strand, within Rru_A0131 at 153.557 kb on + strand, within Rru_A0131 at 153.557 kb on + strand, within Rru_A0131 at 153.558 kb on - strand, within Rru_A0131 at 153.558 kb on - strand, within Rru_A0131 at 153.558 kb on - strand, within Rru_A0131 at 153.558 kb on - strand, within Rru_A0131 at 153.558 kb on - strand, within Rru_A0131 at 153.573 kb on - strand, within Rru_A0131 at 153.639 kb on - strand, within Rru_A0131 at 153.710 kb on + strand, within Rru_A0131 at 153.710 kb on + strand, within Rru_A0131 at 153.711 kb on - strand, within Rru_A0131 at 153.875 kb on + strand, within Rru_A0131 at 153.875 kb on + strand, within Rru_A0131 at 153.875 kb on + strand, within Rru_A0131 at 153.992 kb on + strand, within Rru_A0131 at 153.992 kb on + strand, within Rru_A0131 at 153.992 kb on + strand, within Rru_A0131 at 153.993 kb on - strand, within Rru_A0131 at 153.993 kb on - strand, within Rru_A0131 at 153.993 kb on - strand, within Rru_A0131 at 154.093 kb on + strand at 154.093 kb on + strand at 154.093 kb on + strand at 154.093 kb on + strand at 154.093 kb on + strand at 154.094 kb on - strand at 154.094 kb on - strand at 154.213 kb on + strand at 154.213 kb on + strand at 154.213 kb on + strand at 154.214 kb on - strand at 154.214 kb on - strand at 154.214 kb on - strand at 154.394 kb on + strand, within Rru_A0132 at 154.395 kb on - strand, within Rru_A0132 at 154.396 kb on + strand, within Rru_A0132 at 154.396 kb on + strand, within Rru_A0132 at 154.397 kb on - strand, within Rru_A0132 at 154.420 kb on + strand, within Rru_A0132 at 154.420 kb on + strand, within Rru_A0132 at 154.420 kb on + strand, within Rru_A0132 at 154.421 kb on - strand, within Rru_A0132 at 154.421 kb on - strand, within Rru_A0132 at 154.525 kb on + strand, within Rru_A0132 at 154.525 kb on + strand, within Rru_A0132 at 154.558 kb on + strand, within Rru_A0132 at 154.558 kb on + strand, within Rru_A0132 at 154.559 kb on - strand, within Rru_A0132 at 154.559 kb on - strand, within Rru_A0132 at 154.821 kb on + strand, within Rru_A0132 at 155.065 kb on + strand, within Rru_A0132 at 155.065 kb on + strand, within Rru_A0132 at 155.065 kb on + strand, within Rru_A0132 at 155.065 kb on + strand, within Rru_A0132
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 152,535 + Rru_A0130 0.73 -1.4 152,562 + Rru_A0130 0.75 -0.2 152,562 + Rru_A0130 0.75 +0.4 152,563 - Rru_A0130 0.75 -1.5 152,563 - Rru_A0130 0.75 -0.0 152,574 + Rru_A0130 0.76 -0.1 152,993 + -0.0 152,993 + -0.0 153,020 + -0.3 153,020 + -2.2 153,020 + -1.3 153,020 + -0.0 153,021 - -1.3 153,021 - +1.5 153,022 + -0.0 153,022 + +0.4 153,022 + +2.3 153,023 - -0.0 153,032 + -0.0 153,043 + -0.2 153,057 + -0.0 153,057 + -0.0 153,058 - -0.2 153,069 + -1.4 153,138 + -1.4 153,138 + -0.0 153,138 + -0.0 153,138 + -0.6 153,139 - -0.3 153,139 - -0.0 153,139 - -0.0 153,139 - -0.0 153,151 - +1.9 153,151 - -0.8 153,151 - -0.0 153,151 - +4.3 153,347 + Rru_A0131 0.17 +1.0 153,347 + Rru_A0131 0.17 -0.4 153,347 + Rru_A0131 0.17 -0.5 153,347 + Rru_A0131 0.17 -0.0 153,348 - Rru_A0131 0.17 -0.9 153,356 + Rru_A0131 0.18 -0.0 153,507 + Rru_A0131 0.33 -0.7 153,507 + Rru_A0131 0.33 -0.0 153,507 + Rru_A0131 0.33 -0.0 153,508 - Rru_A0131 0.33 -0.0 153,508 - Rru_A0131 0.33 +5.9 153,557 + Rru_A0131 0.38 +1.0 153,557 + Rru_A0131 0.38 -1.0 153,557 + Rru_A0131 0.38 -0.3 153,557 + Rru_A0131 0.38 -0.9 153,558 - Rru_A0131 0.38 -1.0 153,558 - Rru_A0131 0.38 +0.3 153,558 - Rru_A0131 0.38 -0.0 153,558 - Rru_A0131 0.38 +1.2 153,558 - Rru_A0131 0.38 -0.0 153,573 - Rru_A0131 0.39 -0.0 153,639 - Rru_A0131 0.46 +3.3 153,710 + Rru_A0131 0.53 -1.0 153,710 + Rru_A0131 0.53 -0.1 153,711 - Rru_A0131 0.53 -1.5 153,875 + Rru_A0131 0.69 +5.6 153,875 + Rru_A0131 0.69 -1.6 153,875 + Rru_A0131 0.69 -0.0 153,992 + Rru_A0131 0.80 -1.0 153,992 + Rru_A0131 0.80 +0.9 153,992 + Rru_A0131 0.80 -0.0 153,993 - Rru_A0131 0.81 -0.8 153,993 - Rru_A0131 0.81 -0.9 153,993 - Rru_A0131 0.81 +3.7 154,093 + +0.3 154,093 + -1.2 154,093 + -0.0 154,093 + -0.6 154,093 + -0.8 154,094 - +0.8 154,094 - +5.8 154,213 + -0.0 154,213 + -0.4 154,213 + +3.2 154,214 - +0.3 154,214 - -0.0 154,214 - -0.0 154,394 + Rru_A0132 0.12 +1.8 154,395 - Rru_A0132 0.12 -0.0 154,396 + Rru_A0132 0.12 -1.0 154,396 + Rru_A0132 0.12 -0.0 154,397 - Rru_A0132 0.12 +0.4 154,420 + Rru_A0132 0.13 -1.4 154,420 + Rru_A0132 0.13 -0.4 154,420 + Rru_A0132 0.13 -0.8 154,421 - Rru_A0132 0.13 +2.6 154,421 - Rru_A0132 0.13 -0.0 154,525 + Rru_A0132 0.20 +0.5 154,525 + Rru_A0132 0.20 -0.7 154,558 + Rru_A0132 0.22 +2.3 154,558 + Rru_A0132 0.22 +1.1 154,559 - Rru_A0132 0.22 -1.0 154,559 - Rru_A0132 0.22 +0.3 154,821 + Rru_A0132 0.39 -1.0 155,065 + Rru_A0132 0.54 -0.0 155,065 + Rru_A0132 0.54 +5.0 155,065 + Rru_A0132 0.54 -1.0 155,065 + Rru_A0132 0.54 -0.7
Or see this region's nucleotide sequence