Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0126 and Rru_A0127 overlap by 4 nucleotides Rru_A0127 and Rru_A0128 are separated by 9 nucleotides Rru_A0128 and Rru_A0129 are separated by 100 nucleotides
Rru_A0126: Rru_A0126 - ABC transporter component (NCBI), at 146,951 to 147,766
_A0126
Rru_A0127: Rru_A0127 - ABC-2 transporter component (NCBI), at 147,763 to 148,611
_A0127
Rru_A0128: Rru_A0128 - Na+/H+ antiporter NhaA (NCBI), at 148,621 to 149,820
_A0128
Rru_A0129: Rru_A0129 - hypothetical protein (NCBI), at 149,921 to 151,015
_A0129
Position (kb) 148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 147.866 kb on - strand, within Rru_A0127 at 147.907 kb on + strand, within Rru_A0127 at 148.120 kb on + strand, within Rru_A0127 at 148.204 kb on + strand, within Rru_A0127 at 148.204 kb on + strand, within Rru_A0127 at 148.204 kb on + strand, within Rru_A0127 at 148.204 kb on + strand, within Rru_A0127 at 148.205 kb on - strand, within Rru_A0127 at 148.205 kb on - strand, within Rru_A0127 at 148.205 kb on - strand, within Rru_A0127 at 148.205 kb on - strand, within Rru_A0127 at 148.205 kb on - strand, within Rru_A0127 at 148.205 kb on - strand, within Rru_A0127 at 148.205 kb on - strand, within Rru_A0127 at 148.219 kb on + strand, within Rru_A0127 at 148.219 kb on + strand, within Rru_A0127 at 148.219 kb on + strand, within Rru_A0127 at 148.220 kb on - strand, within Rru_A0127 at 148.220 kb on - strand, within Rru_A0127 at 148.220 kb on - strand, within Rru_A0127 at 148.220 kb on - strand, within Rru_A0127 at 148.378 kb on + strand, within Rru_A0127 at 148.378 kb on + strand, within Rru_A0127 at 148.378 kb on + strand, within Rru_A0127 at 148.378 kb on + strand, within Rru_A0127 at 148.379 kb on - strand, within Rru_A0127 at 148.379 kb on - strand, within Rru_A0127 at 148.379 kb on - strand, within Rru_A0127 at 148.379 kb on - strand, within Rru_A0127 at 148.379 kb on - strand, within Rru_A0127 at 148.382 kb on - strand, within Rru_A0127 at 148.423 kb on + strand, within Rru_A0127 at 148.528 kb on + strand at 148.529 kb on - strand at 148.609 kb on + strand at 148.610 kb on - strand at 149.022 kb on - strand, within Rru_A0128 at 149.022 kb on - strand, within Rru_A0128 at 149.227 kb on - strand, within Rru_A0128 at 149.227 kb on - strand, within Rru_A0128 at 149.295 kb on - strand, within Rru_A0128 at 149.484 kb on - strand, within Rru_A0128 at 149.484 kb on - strand, within Rru_A0128 at 149.484 kb on - strand, within Rru_A0128 at 149.843 kb on + strand at 149.873 kb on - strand at 149.873 kb on - strand at 149.873 kb on - strand at 149.884 kb on - strand at 149.884 kb on - strand at 149.942 kb on + strand at 149.943 kb on - strand at 150.336 kb on - strand, within Rru_A0129 at 150.363 kb on + strand, within Rru_A0129 at 150.363 kb on + strand, within Rru_A0129
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 147,866 - Rru_A0127 0.12 +4.2 147,907 + Rru_A0127 0.17 -1.0 148,120 + Rru_A0127 0.42 +3.3 148,204 + Rru_A0127 0.52 -0.4 148,204 + Rru_A0127 0.52 -1.0 148,204 + Rru_A0127 0.52 -0.8 148,204 + Rru_A0127 0.52 +1.3 148,205 - Rru_A0127 0.52 -0.0 148,205 - Rru_A0127 0.52 -0.0 148,205 - Rru_A0127 0.52 -1.4 148,205 - Rru_A0127 0.52 +0.8 148,205 - Rru_A0127 0.52 -0.0 148,205 - Rru_A0127 0.52 -0.1 148,205 - Rru_A0127 0.52 +2.6 148,219 + Rru_A0127 0.54 -1.4 148,219 + Rru_A0127 0.54 +0.6 148,219 + Rru_A0127 0.54 -0.4 148,220 - Rru_A0127 0.54 -1.0 148,220 - Rru_A0127 0.54 +0.6 148,220 - Rru_A0127 0.54 -1.0 148,220 - Rru_A0127 0.54 -0.0 148,378 + Rru_A0127 0.72 -1.5 148,378 + Rru_A0127 0.72 -0.2 148,378 + Rru_A0127 0.72 -0.8 148,378 + Rru_A0127 0.72 -0.0 148,379 - Rru_A0127 0.73 -0.0 148,379 - Rru_A0127 0.73 -0.0 148,379 - Rru_A0127 0.73 -0.0 148,379 - Rru_A0127 0.73 -0.0 148,379 - Rru_A0127 0.73 -1.0 148,382 - Rru_A0127 0.73 +0.5 148,423 + Rru_A0127 0.78 -0.0 148,528 + -1.0 148,529 - -1.4 148,609 + -0.1 148,610 - +0.0 149,022 - Rru_A0128 0.33 -2.2 149,022 - Rru_A0128 0.33 -3.2 149,227 - Rru_A0128 0.51 -0.0 149,227 - Rru_A0128 0.51 -1.0 149,295 - Rru_A0128 0.56 -0.6 149,484 - Rru_A0128 0.72 +0.6 149,484 - Rru_A0128 0.72 -0.0 149,484 - Rru_A0128 0.72 -0.0 149,843 + -0.0 149,873 - -0.8 149,873 - -0.0 149,873 - -0.0 149,884 - -0.0 149,884 - -0.0 149,942 + -0.0 149,943 - -0.0 150,336 - Rru_A0129 0.38 -1.5 150,363 + Rru_A0129 0.40 -1.6 150,363 + Rru_A0129 0.40 -0.6
Or see this region's nucleotide sequence