Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0073

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0072 and Rru_A0073 are separated by 412 nucleotidesRru_A0073 and Rru_A0074 are separated by 116 nucleotides Rru_A0072: Rru_A0072 - chaperone protein Hsp90 (NCBI), at 83,004 to 84,884 _A0072 Rru_A0073: Rru_A0073 - ribosomal subunit interface protein, putative (NCBI), at 85,297 to 85,677 _A0073 Rru_A0074: Rru_A0074 - Helicase-like (NCBI), at 85,794 to 88,994 _A0074 Position (kb) 85 86Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 85.072 kb on + strandat 85.079 kb on - strandat 85.151 kb on + strandat 85.271 kb on + strandat 85.271 kb on + strandat 85.271 kb on + strandat 85.272 kb on - strandat 85.272 kb on - strandat 85.403 kb on + strand, within Rru_A0073at 85.404 kb on - strand, within Rru_A0073at 85.438 kb on - strand, within Rru_A0073at 85.458 kb on + strand, within Rru_A0073at 85.458 kb on + strand, within Rru_A0073at 85.459 kb on - strand, within Rru_A0073at 85.621 kb on - strand, within Rru_A0073at 85.675 kb on + strandat 85.675 kb on + strandat 85.759 kb on + strandat 86.023 kb on - strandat 86.023 kb on - strandat 86.023 kb on - strandat 86.259 kb on + strand, within Rru_A0074at 86.259 kb on + strand, within Rru_A0074at 86.259 kb on + strand, within Rru_A0074at 86.259 kb on + strand, within Rru_A0074at 86.259 kb on + strand, within Rru_A0074at 86.331 kb on + strand, within Rru_A0074at 86.332 kb on - strand, within Rru_A0074at 86.332 kb on - strand, within Rru_A0074at 86.332 kb on - strand, within Rru_A0074at 86.427 kb on + strand, within Rru_A0074at 86.428 kb on - strand, within Rru_A0074at 86.448 kb on + strand, within Rru_A0074at 86.448 kb on + strand, within Rru_A0074at 86.449 kb on - strand, within Rru_A0074at 86.449 kb on - strand, within Rru_A0074at 86.597 kb on + strand, within Rru_A0074at 86.597 kb on + strand, within Rru_A0074at 86.598 kb on - strand, within Rru_A0074at 86.652 kb on - strand, within Rru_A0074

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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85,072 + +3.7
85,079 - -0.4
85,151 + -0.7
85,271 + +0.4
85,271 + -0.0
85,271 + -0.0
85,272 - -0.0
85,272 - +4.6
85,403 + Rru_A0073 0.28 -1.7
85,404 - Rru_A0073 0.28 -0.0
85,438 - Rru_A0073 0.37 -1.5
85,458 + Rru_A0073 0.42 -1.8
85,458 + Rru_A0073 0.42 -0.0
85,459 - Rru_A0073 0.43 -0.0
85,621 - Rru_A0073 0.85 -1.0
85,675 + +0.8
85,675 + +2.9
85,759 + -0.0
86,023 - -0.0
86,023 - -0.0
86,023 - -0.2
86,259 + Rru_A0074 0.15 -0.7
86,259 + Rru_A0074 0.15 -0.0
86,259 + Rru_A0074 0.15 +5.4
86,259 + Rru_A0074 0.15 -0.0
86,259 + Rru_A0074 0.15 +0.6
86,331 + Rru_A0074 0.17 -0.0
86,332 - Rru_A0074 0.17 +0.6
86,332 - Rru_A0074 0.17 -1.5
86,332 - Rru_A0074 0.17 +1.1
86,427 + Rru_A0074 0.20 -2.4
86,428 - Rru_A0074 0.20 -0.0
86,448 + Rru_A0074 0.20 -0.0
86,448 + Rru_A0074 0.20 -0.0
86,449 - Rru_A0074 0.20 -0.0
86,449 - Rru_A0074 0.20 -1.4
86,597 + Rru_A0074 0.25 -0.0
86,597 + Rru_A0074 0.25 -0.9
86,598 - Rru_A0074 0.25 +2.5
86,652 - Rru_A0074 0.27 -1.1

Or see this region's nucleotide sequence