Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0048

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0047 and Rru_A0048 are separated by 142 nucleotidesRru_A0048 and Rru_A0049 are separated by 78 nucleotidesRru_A0049 and Rru_A0050 overlap by 4 nucleotidesRru_A0050 and Rru_A0051 are separated by 12 nucleotides Rru_A0047: Rru_A0047 - ABC transporter component (NCBI), at 48,770 to 50,377 _A0047 Rru_A0048: Rru_A0048 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 50,520 to 51,146 _A0048 Rru_A0049: Rru_A0049 - Biotin/lipoyl attachment (NCBI), at 51,225 to 51,629 _A0049 Rru_A0050: Rru_A0050 - hypothetical protein (NCBI), at 51,626 to 52,033 _A0050 Rru_A0051: Rru_A0051 - Carboxyl transferase (NCBI), at 52,046 to 53,599 _A0051 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 49.722 kb on + strand, within Rru_A0047at 49.723 kb on - strand, within Rru_A0047at 49.734 kb on + strand, within Rru_A0047at 49.734 kb on + strand, within Rru_A0047at 49.837 kb on + strand, within Rru_A0047at 49.837 kb on + strand, within Rru_A0047at 49.837 kb on + strand, within Rru_A0047at 49.838 kb on - strand, within Rru_A0047at 49.838 kb on - strand, within Rru_A0047at 49.838 kb on - strand, within Rru_A0047at 49.838 kb on - strand, within Rru_A0047at 49.876 kb on + strand, within Rru_A0047at 49.876 kb on + strand, within Rru_A0047at 49.877 kb on - strand, within Rru_A0047at 49.877 kb on - strand, within Rru_A0047at 49.877 kb on - strand, within Rru_A0047at 49.877 kb on - strand, within Rru_A0047at 50.300 kb on - strandat 50.478 kb on - strandat 50.478 kb on - strandat 50.521 kb on + strandat 50.522 kb on - strandat 50.522 kb on - strandat 50.522 kb on - strandat 50.614 kb on + strand, within Rru_A0048at 50.615 kb on - strand, within Rru_A0048at 50.615 kb on - strand, within Rru_A0048at 50.654 kb on - strand, within Rru_A0048at 50.964 kb on + strand, within Rru_A0048at 50.965 kb on - strand, within Rru_A0048at 50.965 kb on - strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.077 kb on + strand, within Rru_A0048at 51.078 kb on - strand, within Rru_A0048at 51.078 kb on - strand, within Rru_A0048at 51.646 kb on + strandat 51.754 kb on + strand, within Rru_A0050at 51.755 kb on - strand, within Rru_A0050at 51.755 kb on - strand, within Rru_A0050at 51.781 kb on + strand, within Rru_A0050at 51.781 kb on + strand, within Rru_A0050at 51.781 kb on + strand, within Rru_A0050at 51.782 kb on - strand, within Rru_A0050at 51.786 kb on + strand, within Rru_A0050at 52.047 kb on + strandat 52.047 kb on + strandat 52.047 kb on + strandat 52.047 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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49,722 + Rru_A0047 0.59 +2.7
49,723 - Rru_A0047 0.59 -1.8
49,734 + Rru_A0047 0.60 -1.8
49,734 + Rru_A0047 0.60 -1.0
49,837 + Rru_A0047 0.66 +2.4
49,837 + Rru_A0047 0.66 -0.5
49,837 + Rru_A0047 0.66 -0.4
49,838 - Rru_A0047 0.66 +2.8
49,838 - Rru_A0047 0.66 -0.4
49,838 - Rru_A0047 0.66 -0.3
49,838 - Rru_A0047 0.66 -0.0
49,876 + Rru_A0047 0.69 -1.1
49,876 + Rru_A0047 0.69 -1.7
49,877 - Rru_A0047 0.69 -0.0
49,877 - Rru_A0047 0.69 +0.7
49,877 - Rru_A0047 0.69 +1.6
49,877 - Rru_A0047 0.69 +0.8
50,300 - +5.3
50,478 - +4.1
50,478 - -0.0
50,521 + -1.1
50,522 - -0.0
50,522 - -0.8
50,522 - -0.4
50,614 + Rru_A0048 0.15 -0.0
50,615 - Rru_A0048 0.15 -1.0
50,615 - Rru_A0048 0.15 -0.0
50,654 - Rru_A0048 0.21 -0.5
50,964 + Rru_A0048 0.71 +4.6
50,965 - Rru_A0048 0.71 +0.5
50,965 - Rru_A0048 0.71 +1.7
51,077 + Rru_A0048 0.89 -0.0
51,077 + Rru_A0048 0.89 +0.2
51,077 + Rru_A0048 0.89 +5.9
51,077 + Rru_A0048 0.89 +1.6
51,077 + Rru_A0048 0.89 +0.2
51,077 + Rru_A0048 0.89 -0.3
51,078 - Rru_A0048 0.89 -0.0
51,078 - Rru_A0048 0.89 -0.8
51,646 + -0.0
51,754 + Rru_A0050 0.31 -0.0
51,755 - Rru_A0050 0.32 -0.5
51,755 - Rru_A0050 0.32 -0.0
51,781 + Rru_A0050 0.38 -0.0
51,781 + Rru_A0050 0.38 -0.0
51,781 + Rru_A0050 0.38 +1.3
51,782 - Rru_A0050 0.38 -0.8
51,786 + Rru_A0050 0.39 -0.0
52,047 + +0.4
52,047 + -0.4
52,047 + -0.0
52,047 + +1.9

Or see this region's nucleotide sequence