Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0022 and Rru_A0023 are separated by 170 nucleotides Rru_A0023 and Rru_A0024 are separated by 124 nucleotides Rru_A0024 and Rru_A0025 are separated by 122 nucleotides Rru_A0025 and Rru_A0026 are separated by 14 nucleotides
Rru_A0022: Rru_A0022 - Glutathione S-transferase-like (NCBI), at 27,098 to 27,766
_A0022
Rru_A0023: Rru_A0023 - hypothetical protein (NCBI), at 27,937 to 28,329
_A0023
Rru_A0024: Rru_A0024 - peptidase (NCBI), at 28,454 to 29,599
_A0024
Rru_A0025: Rru_A0025 - hypothetical protein (NCBI), at 29,722 to 30,261
_A0025
Rru_A0026: Rru_A0026 - hypothetical protein (NCBI), at 30,276 to 31,619
_A0026
Position (kb) 28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 27.764 kb on + strand at 27.765 kb on - strand at 27.765 kb on - strand at 27.843 kb on - strand at 28.048 kb on - strand, within Rru_A0023 at 28.048 kb on - strand, within Rru_A0023 at 28.430 kb on + strand at 28.430 kb on + strand at 28.431 kb on - strand at 28.867 kb on + strand, within Rru_A0024 at 28.867 kb on + strand, within Rru_A0024 at 28.867 kb on + strand, within Rru_A0024 at 29.111 kb on + strand, within Rru_A0024 at 29.111 kb on + strand, within Rru_A0024 at 29.264 kb on - strand, within Rru_A0024 at 29.264 kb on - strand, within Rru_A0024 at 29.264 kb on - strand, within Rru_A0024 at 29.393 kb on - strand, within Rru_A0024 at 29.635 kb on + strand at 29.635 kb on + strand at 29.635 kb on + strand at 29.636 kb on - strand at 29.636 kb on - strand at 29.636 kb on - strand at 29.636 kb on - strand at 29.636 kb on - strand at 29.640 kb on + strand at 29.641 kb on - strand at 29.779 kb on - strand, within Rru_A0025 at 30.110 kb on - strand, within Rru_A0025 at 30.110 kb on - strand, within Rru_A0025 at 30.110 kb on - strand, within Rru_A0025 at 30.110 kb on - strand, within Rru_A0025 at 30.110 kb on - strand, within Rru_A0025 at 30.110 kb on - strand, within Rru_A0025 at 30.271 kb on + strand at 30.271 kb on + strand at 30.271 kb on + strand at 30.271 kb on + strand at 30.271 kb on + strand at 30.272 kb on - strand at 30.378 kb on + strand at 30.378 kb on + strand at 30.379 kb on - strand at 30.379 kb on - strand at 30.379 kb on - strand at 30.379 kb on - strand at 30.379 kb on - strand at 30.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 27,764 + -0.0 27,765 - +2.0 27,765 - +0.8 27,843 - +0.1 28,048 - Rru_A0023 0.28 +1.0 28,048 - Rru_A0023 0.28 -1.4 28,430 + -0.0 28,430 + -0.6 28,431 - -1.4 28,867 + Rru_A0024 0.36 -1.6 28,867 + Rru_A0024 0.36 -0.0 28,867 + Rru_A0024 0.36 -0.0 29,111 + Rru_A0024 0.57 -0.0 29,111 + Rru_A0024 0.57 -0.0 29,264 - Rru_A0024 0.71 -0.9 29,264 - Rru_A0024 0.71 -0.6 29,264 - Rru_A0024 0.71 -2.8 29,393 - Rru_A0024 0.82 -1.6 29,635 + -0.8 29,635 + -1.4 29,635 + +1.9 29,636 - -0.4 29,636 - -1.0 29,636 - -0.0 29,636 - -0.0 29,636 - -0.0 29,640 + -0.0 29,641 - +0.6 29,779 - Rru_A0025 0.11 -1.7 30,110 - Rru_A0025 0.72 -0.0 30,110 - Rru_A0025 0.72 -0.0 30,110 - Rru_A0025 0.72 +3.8 30,110 - Rru_A0025 0.72 -0.0 30,110 - Rru_A0025 0.72 +0.1 30,110 - Rru_A0025 0.72 -0.0 30,271 + +1.4 30,271 + +0.1 30,271 + -0.0 30,271 + -0.6 30,271 + -1.0 30,272 - -0.0 30,378 + +2.1 30,378 + +1.8 30,379 - +0.4 30,379 - -0.2 30,379 - -2.1 30,379 - +6.3 30,379 - -3.0 30,379 - -0.0
Or see this region's nucleotide sequence