Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0048

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0047 and Rru_B0048 overlap by 4 nucleotidesRru_B0048 and Rru_B0049 overlap by 4 nucleotidesRru_B0049 and Rru_B0050 are separated by 2 nucleotides Rru_B0047: Rru_B0047 - NAD-dependent epimerase/dehydratase (NCBI), at 49,682 to 50,716 _B0047 Rru_B0048: Rru_B0048 - Glucose-1-phosphate thymidylyltransferase, long form (NCBI), at 50,713 to 51,597 _B0048 Rru_B0049: Rru_B0049 - dTDP-4-dehydrorhamnose reductase (NCBI), at 51,594 to 52,526 _B0049 Rru_B0050: Rru_B0050 - dTDP-glucose 4,6-dehydratase (NCBI), at 52,529 to 53,584 _B0050 Position (kb) 50 51 52Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 49.730 kb on + strandat 49.801 kb on + strand, within Rru_B0047at 49.803 kb on + strand, within Rru_B0047at 49.880 kb on + strand, within Rru_B0047at 50.045 kb on + strand, within Rru_B0047at 50.045 kb on + strand, within Rru_B0047at 50.046 kb on - strand, within Rru_B0047at 50.114 kb on + strand, within Rru_B0047at 50.145 kb on + strand, within Rru_B0047at 50.145 kb on + strand, within Rru_B0047at 50.145 kb on + strand, within Rru_B0047at 50.146 kb on - strand, within Rru_B0047at 50.146 kb on - strand, within Rru_B0047at 50.146 kb on - strand, within Rru_B0047at 50.147 kb on + strand, within Rru_B0047at 50.147 kb on + strand, within Rru_B0047at 50.147 kb on + strand, within Rru_B0047at 50.147 kb on + strand, within Rru_B0047at 50.147 kb on + strand, within Rru_B0047at 50.148 kb on - strand, within Rru_B0047at 50.171 kb on + strand, within Rru_B0047at 50.172 kb on - strand, within Rru_B0047at 50.357 kb on + strand, within Rru_B0047at 50.357 kb on + strand, within Rru_B0047at 50.358 kb on - strand, within Rru_B0047at 50.358 kb on - strand, within Rru_B0047at 50.406 kb on - strand, within Rru_B0047at 50.406 kb on - strand, within Rru_B0047at 50.407 kb on + strand, within Rru_B0047at 50.407 kb on + strand, within Rru_B0047at 51.859 kb on + strand, within Rru_B0049at 51.860 kb on - strand, within Rru_B0049at 52.567 kb on - strandat 52.567 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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49,730 + +6.3
49,801 + Rru_B0047 0.11 -0.1
49,803 + Rru_B0047 0.12 -0.8
49,880 + Rru_B0047 0.19 +0.0
50,045 + Rru_B0047 0.35 +0.2
50,045 + Rru_B0047 0.35 +2.6
50,046 - Rru_B0047 0.35 +0.8
50,114 + Rru_B0047 0.42 +0.2
50,145 + Rru_B0047 0.45 +1.5
50,145 + Rru_B0047 0.45 +4.0
50,145 + Rru_B0047 0.45 -0.4
50,146 - Rru_B0047 0.45 -1.1
50,146 - Rru_B0047 0.45 -0.5
50,146 - Rru_B0047 0.45 -0.8
50,147 + Rru_B0047 0.45 +0.2
50,147 + Rru_B0047 0.45 +1.2
50,147 + Rru_B0047 0.45 +4.4
50,147 + Rru_B0047 0.45 -0.3
50,147 + Rru_B0047 0.45 -0.6
50,148 - Rru_B0047 0.45 -0.1
50,171 + Rru_B0047 0.47 +1.8
50,172 - Rru_B0047 0.47 -0.8
50,357 + Rru_B0047 0.65 +0.2
50,357 + Rru_B0047 0.65 -0.4
50,358 - Rru_B0047 0.65 +0.2
50,358 - Rru_B0047 0.65 +0.5
50,406 - Rru_B0047 0.70 -1.4
50,406 - Rru_B0047 0.70 -0.2
50,407 + Rru_B0047 0.70 +0.2
50,407 + Rru_B0047 0.70 +0.2
51,859 + Rru_B0049 0.28 +0.2
51,860 - Rru_B0049 0.29 +0.2
52,567 - -1.5
52,567 - +0.2

Or see this region's nucleotide sequence