Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0026 and Rru_B0027 are separated by 283 nucleotides Rru_B0027 and Rru_B0028 overlap by 11 nucleotides
Rru_B0026: Rru_B0026 - SapC (NCBI), at 24,461 to 25,255
_B0026
Rru_B0027: Rru_B0027 - ABC-2 (NCBI), at 25,539 to 26,258
_B0027
Rru_B0028: Rru_B0028 - ABC transporter related (NCBI), at 26,248 to 27,666
_B0028
Position (kb) 25
26
27 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 24.589 kb on + strand, within Rru_B0026 at 24.669 kb on + strand, within Rru_B0026 at 24.670 kb on - strand, within Rru_B0026 at 24.722 kb on + strand, within Rru_B0026 at 24.723 kb on - strand, within Rru_B0026 at 24.723 kb on - strand, within Rru_B0026 at 24.723 kb on - strand, within Rru_B0026 at 24.724 kb on + strand, within Rru_B0026 at 24.724 kb on + strand, within Rru_B0026 at 24.724 kb on + strand, within Rru_B0026 at 24.724 kb on + strand, within Rru_B0026 at 24.724 kb on + strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.746 kb on + strand, within Rru_B0026 at 24.746 kb on + strand, within Rru_B0026 at 24.917 kb on - strand, within Rru_B0026 at 24.917 kb on - strand, within Rru_B0026 at 24.917 kb on - strand, within Rru_B0026 at 25.050 kb on + strand, within Rru_B0026 at 25.217 kb on - strand at 25.217 kb on - strand at 25.217 kb on - strand at 25.298 kb on + strand at 25.298 kb on + strand at 25.369 kb on + strand at 25.369 kb on + strand at 25.397 kb on + strand at 25.413 kb on + strand at 26.176 kb on - strand, within Rru_B0027 at 26.310 kb on + strand at 26.595 kb on + strand, within Rru_B0028 at 26.595 kb on + strand, within Rru_B0028 at 26.975 kb on - strand, within Rru_B0028
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 24,589 + Rru_B0026 0.16 -0.1 24,669 + Rru_B0026 0.26 -1.6 24,670 - Rru_B0026 0.26 +0.2 24,722 + Rru_B0026 0.33 -1.4 24,723 - Rru_B0026 0.33 +3.8 24,723 - Rru_B0026 0.33 +0.8 24,723 - Rru_B0026 0.33 -0.4 24,724 + Rru_B0026 0.33 -0.6 24,724 + Rru_B0026 0.33 -1.6 24,724 + Rru_B0026 0.33 +0.4 24,724 + Rru_B0026 0.33 +5.1 24,724 + Rru_B0026 0.33 -0.5 24,725 - Rru_B0026 0.33 +1.8 24,725 - Rru_B0026 0.33 -0.3 24,725 - Rru_B0026 0.33 +0.2 24,725 - Rru_B0026 0.33 -0.9 24,725 - Rru_B0026 0.33 -0.0 24,725 - Rru_B0026 0.33 -0.8 24,725 - Rru_B0026 0.33 +0.4 24,725 - Rru_B0026 0.33 +0.3 24,725 - Rru_B0026 0.33 -1.1 24,746 + Rru_B0026 0.36 +0.2 24,746 + Rru_B0026 0.36 -0.7 24,917 - Rru_B0026 0.57 -0.4 24,917 - Rru_B0026 0.57 +0.2 24,917 - Rru_B0026 0.57 +0.1 25,050 + Rru_B0026 0.74 +0.2 25,217 - +0.2 25,217 - +0.2 25,217 - +0.2 25,298 + +0.2 25,298 + +0.2 25,369 + +0.2 25,369 + +0.2 25,397 + +0.1 25,413 + -0.2 26,176 - Rru_B0027 0.88 +2.5 26,310 + +0.2 26,595 + Rru_B0028 0.24 -0.0 26,595 + Rru_B0028 0.24 -0.1 26,975 - Rru_B0028 0.51 +4.1
Or see this region's nucleotide sequence