Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1428

Experiment: Hans 1000x minerals

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1427 and Pf6N2E2_1428 are separated by 305 nucleotidesPf6N2E2_1428 and Pf6N2E2_1429 are separated by 133 nucleotidesPf6N2E2_1429 and Pf6N2E2_1430 are separated by 56 nucleotides Pf6N2E2_1427 - 6-aminohexanoate-dimer hydrolase (EC 3.5.1.46), at 1,675,677 to 1,676,939 _1427 Pf6N2E2_1428 - Alkanesulfonates-binding protein, at 1,677,245 to 1,678,348 _1428 Pf6N2E2_1429 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 1,678,482 to 1,679,243 _1429 Pf6N2E2_1430 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 1,679,300 to 1,680,625 _1430 Position (kb) 1677 1678 1679Strain fitness (log2 ratio) -1 0 1at 1676.260 kb on + strand, within Pf6N2E2_1427at 1676.261 kb on - strand, within Pf6N2E2_1427at 1676.440 kb on + strand, within Pf6N2E2_1427at 1676.440 kb on + strand, within Pf6N2E2_1427at 1676.440 kb on + strand, within Pf6N2E2_1427at 1676.441 kb on - strand, within Pf6N2E2_1427at 1676.441 kb on - strand, within Pf6N2E2_1427at 1677.202 kb on + strandat 1677.255 kb on + strandat 1677.430 kb on - strand, within Pf6N2E2_1428at 1677.430 kb on - strand, within Pf6N2E2_1428at 1677.430 kb on - strand, within Pf6N2E2_1428at 1677.430 kb on - strand, within Pf6N2E2_1428at 1677.708 kb on + strand, within Pf6N2E2_1428at 1677.708 kb on + strand, within Pf6N2E2_1428at 1677.709 kb on - strand, within Pf6N2E2_1428at 1677.709 kb on - strand, within Pf6N2E2_1428at 1677.709 kb on - strand, within Pf6N2E2_1428at 1677.709 kb on - strand, within Pf6N2E2_1428at 1677.732 kb on + strand, within Pf6N2E2_1428at 1677.732 kb on + strand, within Pf6N2E2_1428at 1677.732 kb on + strand, within Pf6N2E2_1428at 1677.733 kb on - strand, within Pf6N2E2_1428at 1677.733 kb on - strand, within Pf6N2E2_1428at 1677.733 kb on - strand, within Pf6N2E2_1428at 1677.780 kb on - strand, within Pf6N2E2_1428at 1677.780 kb on - strand, within Pf6N2E2_1428at 1677.853 kb on - strand, within Pf6N2E2_1428at 1677.873 kb on - strand, within Pf6N2E2_1428at 1678.152 kb on - strand, within Pf6N2E2_1428at 1678.152 kb on - strand, within Pf6N2E2_1428at 1678.176 kb on + strand, within Pf6N2E2_1428at 1678.177 kb on - strand, within Pf6N2E2_1428at 1678.395 kb on + strandat 1678.440 kb on + strandat 1678.441 kb on - strandat 1678.441 kb on - strandat 1678.441 kb on - strandat 1678.588 kb on + strand, within Pf6N2E2_1429at 1678.588 kb on + strand, within Pf6N2E2_1429at 1678.588 kb on + strand, within Pf6N2E2_1429at 1678.588 kb on + strand, within Pf6N2E2_1429at 1678.589 kb on - strand, within Pf6N2E2_1429at 1678.589 kb on - strand, within Pf6N2E2_1429at 1678.589 kb on - strand, within Pf6N2E2_1429at 1678.589 kb on - strand, within Pf6N2E2_1429at 1678.589 kb on - strand, within Pf6N2E2_1429at 1678.589 kb on - strand, within Pf6N2E2_1429at 1679.106 kb on - strand, within Pf6N2E2_1429at 1679.195 kb on - strandat 1679.263 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hans 1000x minerals
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1,676,260 + Pf6N2E2_1427 0.46 -0.0
1,676,261 - Pf6N2E2_1427 0.46 -1.5
1,676,440 + Pf6N2E2_1427 0.60 +1.2
1,676,440 + Pf6N2E2_1427 0.60 +0.4
1,676,440 + Pf6N2E2_1427 0.60 +1.0
1,676,441 - Pf6N2E2_1427 0.60 +0.5
1,676,441 - Pf6N2E2_1427 0.60 +0.7
1,677,202 + -0.8
1,677,255 + +0.7
1,677,430 - Pf6N2E2_1428 0.17 -0.3
1,677,430 - Pf6N2E2_1428 0.17 -1.1
1,677,430 - Pf6N2E2_1428 0.17 -1.1
1,677,430 - Pf6N2E2_1428 0.17 -1.0
1,677,708 + Pf6N2E2_1428 0.42 +0.8
1,677,708 + Pf6N2E2_1428 0.42 -0.8
1,677,709 - Pf6N2E2_1428 0.42 +0.4
1,677,709 - Pf6N2E2_1428 0.42 +0.3
1,677,709 - Pf6N2E2_1428 0.42 -1.4
1,677,709 - Pf6N2E2_1428 0.42 -0.5
1,677,732 + Pf6N2E2_1428 0.44 -0.6
1,677,732 + Pf6N2E2_1428 0.44 -1.4
1,677,732 + Pf6N2E2_1428 0.44 -1.4
1,677,733 - Pf6N2E2_1428 0.44 -0.1
1,677,733 - Pf6N2E2_1428 0.44 -0.0
1,677,733 - Pf6N2E2_1428 0.44 -0.2
1,677,780 - Pf6N2E2_1428 0.48 -0.6
1,677,780 - Pf6N2E2_1428 0.48 -0.8
1,677,853 - Pf6N2E2_1428 0.55 +1.0
1,677,873 - Pf6N2E2_1428 0.57 +0.2
1,678,152 - Pf6N2E2_1428 0.82 -0.6
1,678,152 - Pf6N2E2_1428 0.82 +0.7
1,678,176 + Pf6N2E2_1428 0.84 -0.5
1,678,177 - Pf6N2E2_1428 0.84 -0.9
1,678,395 + -0.7
1,678,440 + -1.5
1,678,441 - +0.1
1,678,441 - +0.9
1,678,441 - +0.6
1,678,588 + Pf6N2E2_1429 0.14 +0.4
1,678,588 + Pf6N2E2_1429 0.14 -0.2
1,678,588 + Pf6N2E2_1429 0.14 +0.7
1,678,588 + Pf6N2E2_1429 0.14 -0.2
1,678,589 - Pf6N2E2_1429 0.14 -0.6
1,678,589 - Pf6N2E2_1429 0.14 +0.4
1,678,589 - Pf6N2E2_1429 0.14 -1.6
1,678,589 - Pf6N2E2_1429 0.14 +0.4
1,678,589 - Pf6N2E2_1429 0.14 +0.0
1,678,589 - Pf6N2E2_1429 0.14 -0.4
1,679,106 - Pf6N2E2_1429 0.82 -0.5
1,679,195 - +0.2
1,679,263 + -0.0

Or see this region's nucleotide sequence