Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3953

Experiment: L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3952 and Ga0059261_3953 overlap by 1 nucleotidesGa0059261_3953 and Ga0059261_3954 are separated by 48 nucleotides Ga0059261_3952: Ga0059261_3952 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 4,066,654 to 4,068,117 _3952 Ga0059261_3953: Ga0059261_3953 - Type II secretory pathway, component PulF, at 4,068,117 to 4,069,340 _3953 Ga0059261_3954: Ga0059261_3954 - Homoserine acetyltransferase, at 4,069,389 to 4,070,468 _3954 Position (kb) 4068 4069 4070Strain fitness (log2 ratio) -2 -1 0 1at 4067.141 kb on - strand, within Ga0059261_3952at 4067.161 kb on - strand, within Ga0059261_3952at 4067.426 kb on - strand, within Ga0059261_3952at 4067.426 kb on - strand, within Ga0059261_3952at 4067.463 kb on + strand, within Ga0059261_3952at 4067.463 kb on + strand, within Ga0059261_3952at 4067.464 kb on - strand, within Ga0059261_3952at 4067.464 kb on - strand, within Ga0059261_3952at 4067.492 kb on - strand, within Ga0059261_3952at 4067.679 kb on + strand, within Ga0059261_3952at 4067.679 kb on + strand, within Ga0059261_3952at 4067.679 kb on + strand, within Ga0059261_3952at 4067.679 kb on + strand, within Ga0059261_3952at 4067.679 kb on + strand, within Ga0059261_3952at 4067.679 kb on + strand, within Ga0059261_3952at 4067.679 kb on + strand, within Ga0059261_3952at 4067.679 kb on + strand, within Ga0059261_3952at 4067.679 kb on + strand, within Ga0059261_3952at 4067.680 kb on - strand, within Ga0059261_3952at 4067.680 kb on - strand, within Ga0059261_3952at 4067.680 kb on - strand, within Ga0059261_3952at 4067.680 kb on - strand, within Ga0059261_3952at 4067.680 kb on - strand, within Ga0059261_3952at 4067.680 kb on - strand, within Ga0059261_3952at 4067.735 kb on - strand, within Ga0059261_3952at 4067.789 kb on + strand, within Ga0059261_3952at 4067.789 kb on + strand, within Ga0059261_3952at 4067.789 kb on + strand, within Ga0059261_3952at 4067.789 kb on + strand, within Ga0059261_3952at 4067.789 kb on + strand, within Ga0059261_3952at 4067.789 kb on + strandat 4067.790 kb on - strand, within Ga0059261_3952at 4067.790 kb on - strand, within Ga0059261_3952at 4067.935 kb on + strand, within Ga0059261_3952at 4067.935 kb on + strand, within Ga0059261_3952at 4067.936 kb on - strand, within Ga0059261_3952at 4068.467 kb on + strand, within Ga0059261_3953at 4068.467 kb on + strand, within Ga0059261_3953at 4068.468 kb on - strand, within Ga0059261_3953at 4068.468 kb on - strand, within Ga0059261_3953at 4068.484 kb on + strand, within Ga0059261_3953at 4068.484 kb on + strand, within Ga0059261_3953at 4068.485 kb on - strand, within Ga0059261_3953at 4068.516 kb on + strand, within Ga0059261_3953at 4068.636 kb on + strand, within Ga0059261_3953at 4068.636 kb on + strand, within Ga0059261_3953at 4068.637 kb on - strand, within Ga0059261_3953at 4068.690 kb on + strand, within Ga0059261_3953at 4068.690 kb on + strand, within Ga0059261_3953at 4068.690 kb on + strand, within Ga0059261_3953at 4068.690 kb on + strand, within Ga0059261_3953at 4068.690 kb on + strand, within Ga0059261_3953at 4068.690 kb on + strandat 4068.690 kb on + strand, within Ga0059261_3953at 4068.690 kb on + strand, within Ga0059261_3953at 4068.690 kb on + strand, within Ga0059261_3953at 4068.690 kb on + strand, within Ga0059261_3953at 4068.691 kb on - strand, within Ga0059261_3953at 4068.691 kb on - strand, within Ga0059261_3953at 4068.691 kb on - strand, within Ga0059261_3953at 4068.691 kb on - strand, within Ga0059261_3953at 4068.691 kb on - strand, within Ga0059261_3953at 4068.691 kb on - strand, within Ga0059261_3953at 4068.691 kb on - strand, within Ga0059261_3953at 4068.798 kb on + strand, within Ga0059261_3953at 4068.798 kb on + strand, within Ga0059261_3953at 4068.798 kb on + strand, within Ga0059261_3953at 4068.798 kb on + strand, within Ga0059261_3953at 4068.798 kb on + strand, within Ga0059261_3953at 4068.798 kb on + strand, within Ga0059261_3953at 4068.798 kb on + strandat 4068.798 kb on + strand, within Ga0059261_3953at 4068.798 kb on + strand, within Ga0059261_3953at 4068.799 kb on - strand, within Ga0059261_3953at 4068.799 kb on - strand, within Ga0059261_3953at 4068.799 kb on - strand, within Ga0059261_3953at 4068.799 kb on - strand, within Ga0059261_3953at 4068.799 kb on - strand, within Ga0059261_3953at 4068.799 kb on - strand, within Ga0059261_3953at 4068.834 kb on + strand, within Ga0059261_3953at 4068.834 kb on + strand, within Ga0059261_3953at 4068.834 kb on + strand, within Ga0059261_3953at 4068.834 kb on + strand, within Ga0059261_3953at 4068.834 kb on + strand, within Ga0059261_3953at 4068.834 kb on + strand, within Ga0059261_3953at 4068.834 kb on + strand, within Ga0059261_3953at 4068.835 kb on - strand, within Ga0059261_3953at 4068.835 kb on - strand, within Ga0059261_3953at 4068.835 kb on - strand, within Ga0059261_3953at 4068.835 kb on - strand, within Ga0059261_3953at 4068.835 kb on - strand, within Ga0059261_3953at 4068.835 kb on - strand, within Ga0059261_3953at 4068.926 kb on + strand, within Ga0059261_3953at 4068.926 kb on + strand, within Ga0059261_3953at 4068.927 kb on - strand, within Ga0059261_3953at 4068.927 kb on - strand, within Ga0059261_3953at 4069.368 kb on - strandat 4069.390 kb on + strandat 4069.390 kb on + strandat 4069.390 kb on + strandat 4069.390 kb on + strandat 4069.390 kb on + strandat 4069.390 kb on + strandat 4069.390 kb on + strandat 4069.390 kb on + strandat 4069.391 kb on - strandat 4069.391 kb on - strandat 4069.391 kb on - strandat 4069.391 kb on - strandat 4069.391 kb on - strandat 4069.391 kb on - strandat 4069.391 kb on - strandat 4069.448 kb on + strandat 4069.448 kb on + strandat 4069.448 kb on + strandat 4069.448 kb on + strandat 4069.448 kb on + strandat 4069.448 kb on + strandat 4069.448 kb on + strandat 4069.448 kb on + strandat 4069.448 kb on + strandat 4069.448 kb on + strandat 4069.448 kb on + strandat 4069.449 kb on - strandat 4069.449 kb on - strandat 4069.449 kb on - strandat 4069.449 kb on - strandat 4069.449 kb on - strandat 4069.449 kb on - strandat 4069.449 kb on - strandat 4069.449 kb on - strandat 4069.449 kb on - strandat 4069.624 kb on + strand, within Ga0059261_3954at 4069.624 kb on + strand, within Ga0059261_3954at 4069.624 kb on + strand, within Ga0059261_3954at 4069.624 kb on + strand, within Ga0059261_3954at 4069.624 kb on + strand, within Ga0059261_3954at 4069.625 kb on - strand, within Ga0059261_3954at 4069.625 kb on - strand, within Ga0059261_3954at 4069.625 kb on - strand, within Ga0059261_3954at 4069.625 kb on - strand, within Ga0059261_3954at 4069.625 kb on - strand, within Ga0059261_3954at 4069.648 kb on + strand, within Ga0059261_3954at 4069.648 kb on + strand, within Ga0059261_3954at 4069.648 kb on + strand, within Ga0059261_3954at 4069.648 kb on + strand, within Ga0059261_3954at 4069.648 kb on + strand, within Ga0059261_3954at 4069.648 kb on + strand, within Ga0059261_3954at 4069.649 kb on - strand, within Ga0059261_3954at 4069.649 kb on - strand, within Ga0059261_3954at 4069.649 kb on - strand, within Ga0059261_3954at 4069.705 kb on + strand, within Ga0059261_3954at 4069.705 kb on + strand, within Ga0059261_3954at 4069.705 kb on + strand, within Ga0059261_3954at 4069.705 kb on + strand, within Ga0059261_3954at 4069.705 kb on + strand, within Ga0059261_3954at 4069.705 kb on + strand, within Ga0059261_3954at 4069.706 kb on - strand, within Ga0059261_3954at 4069.706 kb on - strand, within Ga0059261_3954at 4069.706 kb on - strand, within Ga0059261_3954at 4069.706 kb on - strand, within Ga0059261_3954at 4069.747 kb on + strand, within Ga0059261_3954at 4069.747 kb on + strandat 4069.747 kb on + strand, within Ga0059261_3954at 4069.747 kb on + strand, within Ga0059261_3954at 4069.748 kb on - strand, within Ga0059261_3954at 4069.748 kb on - strand, within Ga0059261_3954at 4069.748 kb on - strandat 4069.778 kb on - strand, within Ga0059261_3954at 4069.819 kb on + strand, within Ga0059261_3954at 4069.819 kb on + strand, within Ga0059261_3954at 4069.880 kb on + strand, within Ga0059261_3954at 4069.962 kb on + strand, within Ga0059261_3954at 4069.962 kb on + strand, within Ga0059261_3954at 4069.962 kb on + strand, within Ga0059261_3954at 4069.963 kb on - strandat 4069.963 kb on - strand, within Ga0059261_3954at 4069.963 kb on - strand, within Ga0059261_3954at 4070.068 kb on + strand, within Ga0059261_3954at 4070.068 kb on + strand, within Ga0059261_3954at 4070.068 kb on + strand, within Ga0059261_3954at 4070.069 kb on - strand, within Ga0059261_3954at 4070.069 kb on - strand, within Ga0059261_3954at 4070.069 kb on - strand, within Ga0059261_3954at 4070.069 kb on - strand, within Ga0059261_3954at 4070.074 kb on + strand, within Ga0059261_3954at 4070.074 kb on + strand, within Ga0059261_3954at 4070.075 kb on - strandat 4070.075 kb on - strand, within Ga0059261_3954at 4070.155 kb on + strand, within Ga0059261_3954at 4070.188 kb on + strand, within Ga0059261_3954at 4070.188 kb on + strand, within Ga0059261_3954at 4070.189 kb on - strand, within Ga0059261_3954at 4070.336 kb on + strand, within Ga0059261_3954at 4070.336 kb on + strand, within Ga0059261_3954at 4070.337 kb on - strand, within Ga0059261_3954at 4070.337 kb on - strand, within Ga0059261_3954

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins
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4,067,141 - Ga0059261_3952 0.33 +0.4
4,067,161 - Ga0059261_3952 0.35 +0.3
4,067,426 - Ga0059261_3952 0.53 -0.4
4,067,426 - Ga0059261_3952 0.53 +0.3
4,067,463 + Ga0059261_3952 0.55 -0.3
4,067,463 + Ga0059261_3952 0.55 +1.6
4,067,464 - Ga0059261_3952 0.55 +0.7
4,067,464 - Ga0059261_3952 0.55 -0.8
4,067,492 - Ga0059261_3952 0.57 -1.1
4,067,679 + Ga0059261_3952 0.70 -1.0
4,067,679 + Ga0059261_3952 0.70 -0.7
4,067,679 + Ga0059261_3952 0.70 -0.8
4,067,679 + Ga0059261_3952 0.70 -1.5
4,067,679 + Ga0059261_3952 0.70 -0.6
4,067,679 + Ga0059261_3952 0.70 +0.0
4,067,679 + Ga0059261_3952 0.70 -1.1
4,067,679 + Ga0059261_3952 0.70 -0.6
4,067,679 + Ga0059261_3952 0.70 -0.5
4,067,680 - Ga0059261_3952 0.70 +0.4
4,067,680 - Ga0059261_3952 0.70 -1.6
4,067,680 - Ga0059261_3952 0.70 -2.0
4,067,680 - Ga0059261_3952 0.70 -0.3
4,067,680 - Ga0059261_3952 0.70 -0.5
4,067,680 - Ga0059261_3952 0.70 -0.0
4,067,735 - Ga0059261_3952 0.74 -0.0
4,067,789 + Ga0059261_3952 0.78 -0.3
4,067,789 + Ga0059261_3952 0.78 -0.3
4,067,789 + Ga0059261_3952 0.78 +0.3
4,067,789 + Ga0059261_3952 0.78 -0.9
4,067,789 + Ga0059261_3952 0.78 +0.2
4,067,789 + -0.2
4,067,790 - Ga0059261_3952 0.78 -1.0
4,067,790 - Ga0059261_3952 0.78 +0.1
4,067,935 + Ga0059261_3952 0.88 +0.4
4,067,935 + Ga0059261_3952 0.88 +1.2
4,067,936 - Ga0059261_3952 0.88 +0.0
4,068,467 + Ga0059261_3953 0.29 +0.2
4,068,467 + Ga0059261_3953 0.29 +0.1
4,068,468 - Ga0059261_3953 0.29 -0.1
4,068,468 - Ga0059261_3953 0.29 -0.4
4,068,484 + Ga0059261_3953 0.30 -0.0
4,068,484 + Ga0059261_3953 0.30 -0.1
4,068,485 - Ga0059261_3953 0.30 +0.3
4,068,516 + Ga0059261_3953 0.33 -0.5
4,068,636 + Ga0059261_3953 0.42 -1.0
4,068,636 + Ga0059261_3953 0.42 -0.4
4,068,637 - Ga0059261_3953 0.42 +0.3
4,068,690 + Ga0059261_3953 0.47 -0.5
4,068,690 + Ga0059261_3953 0.47 -0.5
4,068,690 + Ga0059261_3953 0.47 -0.0
4,068,690 + Ga0059261_3953 0.47 -0.8
4,068,690 + Ga0059261_3953 0.47 +0.2
4,068,690 + -0.3
4,068,690 + Ga0059261_3953 0.47 +0.9
4,068,690 + Ga0059261_3953 0.47 -0.1
4,068,690 + Ga0059261_3953 0.47 -0.1
4,068,690 + Ga0059261_3953 0.47 -0.7
4,068,691 - Ga0059261_3953 0.47 -0.2
4,068,691 - Ga0059261_3953 0.47 -0.9
4,068,691 - Ga0059261_3953 0.47 -0.4
4,068,691 - Ga0059261_3953 0.47 -0.5
4,068,691 - Ga0059261_3953 0.47 -2.0
4,068,691 - Ga0059261_3953 0.47 -1.7
4,068,691 - Ga0059261_3953 0.47 +0.2
4,068,798 + Ga0059261_3953 0.56 -0.4
4,068,798 + Ga0059261_3953 0.56 -0.6
4,068,798 + Ga0059261_3953 0.56 -0.6
4,068,798 + Ga0059261_3953 0.56 -0.4
4,068,798 + Ga0059261_3953 0.56 -0.1
4,068,798 + Ga0059261_3953 0.56 -0.5
4,068,798 + -1.9
4,068,798 + Ga0059261_3953 0.56 +0.3
4,068,798 + Ga0059261_3953 0.56 -0.0
4,068,799 - Ga0059261_3953 0.56 +0.3
4,068,799 - Ga0059261_3953 0.56 -1.0
4,068,799 - Ga0059261_3953 0.56 -0.9
4,068,799 - Ga0059261_3953 0.56 -0.7
4,068,799 - Ga0059261_3953 0.56 -0.6
4,068,799 - Ga0059261_3953 0.56 -1.1
4,068,834 + Ga0059261_3953 0.59 -0.0
4,068,834 + Ga0059261_3953 0.59 -0.6
4,068,834 + Ga0059261_3953 0.59 -0.8
4,068,834 + Ga0059261_3953 0.59 +0.8
4,068,834 + Ga0059261_3953 0.59 -0.2
4,068,834 + Ga0059261_3953 0.59 +0.1
4,068,834 + Ga0059261_3953 0.59 -0.5
4,068,835 - Ga0059261_3953 0.59 -0.9
4,068,835 - Ga0059261_3953 0.59 +0.8
4,068,835 - Ga0059261_3953 0.59 -0.4
4,068,835 - Ga0059261_3953 0.59 -0.2
4,068,835 - Ga0059261_3953 0.59 -1.5
4,068,835 - Ga0059261_3953 0.59 -0.4
4,068,926 + Ga0059261_3953 0.66 +0.2
4,068,926 + Ga0059261_3953 0.66 +0.1
4,068,927 - Ga0059261_3953 0.66 +0.3
4,068,927 - Ga0059261_3953 0.66 -0.9
4,069,368 - +0.4
4,069,390 + +1.2
4,069,390 + -0.1
4,069,390 + -0.0
4,069,390 + -0.3
4,069,390 + -0.8
4,069,390 + -0.0
4,069,390 + +0.0
4,069,390 + +0.1
4,069,391 - +0.3
4,069,391 - -0.1
4,069,391 - -1.3
4,069,391 - -0.5
4,069,391 - +0.2
4,069,391 - -0.5
4,069,391 - +0.7
4,069,448 + -2.4
4,069,448 + +0.1
4,069,448 + +1.0
4,069,448 + +1.4
4,069,448 + +0.5
4,069,448 + +1.0
4,069,448 + +1.1
4,069,448 + +0.3
4,069,448 + +0.4
4,069,448 + +0.1
4,069,448 + -0.5
4,069,449 - +0.1
4,069,449 - +0.0
4,069,449 - -1.5
4,069,449 - -0.2
4,069,449 - -1.3
4,069,449 - -0.4
4,069,449 - -1.1
4,069,449 - +0.0
4,069,449 - +0.6
4,069,624 + Ga0059261_3954 0.22 -0.2
4,069,624 + Ga0059261_3954 0.22 +0.2
4,069,624 + Ga0059261_3954 0.22 -0.1
4,069,624 + Ga0059261_3954 0.22 +0.1
4,069,624 + Ga0059261_3954 0.22 -0.2
4,069,625 - Ga0059261_3954 0.22 +0.5
4,069,625 - Ga0059261_3954 0.22 +0.4
4,069,625 - Ga0059261_3954 0.22 +1.7
4,069,625 - Ga0059261_3954 0.22 -0.2
4,069,625 - Ga0059261_3954 0.22 +0.3
4,069,648 + Ga0059261_3954 0.24 +0.2
4,069,648 + Ga0059261_3954 0.24 +1.1
4,069,648 + Ga0059261_3954 0.24 +0.0
4,069,648 + Ga0059261_3954 0.24 +0.4
4,069,648 + Ga0059261_3954 0.24 +0.5
4,069,648 + Ga0059261_3954 0.24 +0.1
4,069,649 - Ga0059261_3954 0.24 -0.2
4,069,649 - Ga0059261_3954 0.24 -0.4
4,069,649 - Ga0059261_3954 0.24 -0.4
4,069,705 + Ga0059261_3954 0.29 +0.6
4,069,705 + Ga0059261_3954 0.29 +0.1
4,069,705 + Ga0059261_3954 0.29 -1.1
4,069,705 + Ga0059261_3954 0.29 -1.0
4,069,705 + Ga0059261_3954 0.29 +0.2
4,069,705 + Ga0059261_3954 0.29 -0.2
4,069,706 - Ga0059261_3954 0.29 -0.2
4,069,706 - Ga0059261_3954 0.29 -0.4
4,069,706 - Ga0059261_3954 0.29 +0.1
4,069,706 - Ga0059261_3954 0.29 +0.0
4,069,747 + Ga0059261_3954 0.33 +0.3
4,069,747 + +0.5
4,069,747 + Ga0059261_3954 0.33 +0.0
4,069,747 + Ga0059261_3954 0.33 +0.1
4,069,748 - Ga0059261_3954 0.33 -0.1
4,069,748 - Ga0059261_3954 0.33 +0.1
4,069,748 - -1.2
4,069,778 - Ga0059261_3954 0.36 +0.3
4,069,819 + Ga0059261_3954 0.40 -0.2
4,069,819 + Ga0059261_3954 0.40 +0.3
4,069,880 + Ga0059261_3954 0.45 +0.4
4,069,962 + Ga0059261_3954 0.53 +0.9
4,069,962 + Ga0059261_3954 0.53 +0.2
4,069,962 + Ga0059261_3954 0.53 +0.0
4,069,963 - +0.9
4,069,963 - Ga0059261_3954 0.53 -0.1
4,069,963 - Ga0059261_3954 0.53 -0.8
4,070,068 + Ga0059261_3954 0.63 -0.7
4,070,068 + Ga0059261_3954 0.63 -0.1
4,070,068 + Ga0059261_3954 0.63 -0.0
4,070,069 - Ga0059261_3954 0.63 -1.0
4,070,069 - Ga0059261_3954 0.63 -0.1
4,070,069 - Ga0059261_3954 0.63 +0.1
4,070,069 - Ga0059261_3954 0.63 -1.6
4,070,074 + Ga0059261_3954 0.63 -0.2
4,070,074 + Ga0059261_3954 0.63 +0.3
4,070,075 - +1.0
4,070,075 - Ga0059261_3954 0.64 +1.0
4,070,155 + Ga0059261_3954 0.71 +0.7
4,070,188 + Ga0059261_3954 0.74 +0.5
4,070,188 + Ga0059261_3954 0.74 -0.2
4,070,189 - Ga0059261_3954 0.74 -0.1
4,070,336 + Ga0059261_3954 0.88 +0.6
4,070,336 + Ga0059261_3954 0.88 +0.2
4,070,337 - Ga0059261_3954 0.88 +0.1
4,070,337 - Ga0059261_3954 0.88 +0.7

Or see this region's nucleotide sequence