Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1441

Experiment: L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1440 and Ga0059261_1441 are separated by 10 nucleotidesGa0059261_1441 and Ga0059261_1442 are separated by 60 nucleotidesGa0059261_1442 and Ga0059261_1443 are separated by 52 nucleotides Ga0059261_1440: Ga0059261_1440 - Exodeoxyribonuclease VII large subunit (EC 3.1.11.6), at 1,519,441 to 1,520,820 _1440 Ga0059261_1441: Ga0059261_1441 - phosphoribosylamine--glycine ligase (EC 6.3.4.13), at 1,520,831 to 1,522,087 _1441 Ga0059261_1442: Ga0059261_1442 - hypothetical protein, at 1,522,148 to 1,522,360 _1442 Ga0059261_1443: Ga0059261_1443 - Hemolysins and related proteins containing CBS domains, at 1,522,413 to 1,523,720 _1443 Position (kb) 1520 1521 1522 1523Strain fitness (log2 ratio) -2 -1 0 1at 1520.937 kb on - strandat 1522.106 kb on + strandat 1522.106 kb on + strandat 1522.107 kb on - strandat 1522.117 kb on + strandat 1522.118 kb on - strandat 1522.358 kb on + strandat 1522.358 kb on + strandat 1522.358 kb on + strandat 1522.358 kb on + strandat 1522.359 kb on - strandat 1522.359 kb on - strandat 1522.398 kb on + strandat 1522.398 kb on + strandat 1522.399 kb on - strandat 1522.414 kb on + strandat 1522.414 kb on + strandat 1522.414 kb on + strandat 1522.561 kb on + strand, within Ga0059261_1443at 1522.561 kb on + strand, within Ga0059261_1443at 1522.561 kb on + strand, within Ga0059261_1443at 1522.561 kb on + strand, within Ga0059261_1443at 1522.562 kb on - strand, within Ga0059261_1443at 1522.562 kb on - strand, within Ga0059261_1443at 1522.756 kb on + strand, within Ga0059261_1443at 1522.756 kb on + strand, within Ga0059261_1443at 1522.757 kb on - strand, within Ga0059261_1443

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins
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1,520,937 - -2.4
1,522,106 + -0.7
1,522,106 + +0.1
1,522,107 - +1.2
1,522,117 + -0.2
1,522,118 - -0.4
1,522,358 + +0.3
1,522,358 + +0.1
1,522,358 + -0.2
1,522,358 + -0.2
1,522,359 - +1.5
1,522,359 - +0.5
1,522,398 + +0.1
1,522,398 + +0.5
1,522,399 - +0.9
1,522,414 + +0.3
1,522,414 + -1.3
1,522,414 + -0.4
1,522,561 + Ga0059261_1443 0.11 -0.5
1,522,561 + Ga0059261_1443 0.11 -0.5
1,522,561 + Ga0059261_1443 0.11 -0.9
1,522,561 + Ga0059261_1443 0.11 -0.6
1,522,562 - Ga0059261_1443 0.11 -0.5
1,522,562 - Ga0059261_1443 0.11 -0.2
1,522,756 + Ga0059261_1443 0.26 -1.1
1,522,756 + Ga0059261_1443 0.26 -1.3
1,522,757 - Ga0059261_1443 0.26 -2.1

Or see this region's nucleotide sequence