Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0456

Experiment: L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0454 and Ga0059261_0455 are separated by 25 nucleotidesGa0059261_0455 and Ga0059261_0456 are separated by 72 nucleotidesGa0059261_0456 and Ga0059261_0457 are separated by 102 nucleotides Ga0059261_0454: Ga0059261_0454 - Nucleoside-diphosphate-sugar epimerases, at 437,661 to 440,252 _0454 Ga0059261_0455: Ga0059261_0455 - transcriptional regulator, AraC family, at 440,278 to 441,018 _0455 Ga0059261_0456: Ga0059261_0456 - Sterol desaturase, at 441,091 to 441,930 _0456 Ga0059261_0457: Ga0059261_0457 - copper-(or silver)-translocating P-type ATPase, at 442,033 to 444,417 _0457 Position (kb) 441 442Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 440.223 kb on + strandat 440.223 kb on + strandat 440.223 kb on + strandat 440.223 kb on + strandat 440.224 kb on - strandat 440.224 kb on - strandat 440.478 kb on + strand, within Ga0059261_0455at 440.478 kb on + strand, within Ga0059261_0455at 440.536 kb on + strand, within Ga0059261_0455at 440.536 kb on + strand, within Ga0059261_0455at 440.536 kb on + strand, within Ga0059261_0455at 440.536 kb on + strand, within Ga0059261_0455at 440.536 kb on + strand, within Ga0059261_0455at 440.537 kb on - strand, within Ga0059261_0455at 440.537 kb on - strand, within Ga0059261_0455at 440.537 kb on - strand, within Ga0059261_0455at 440.537 kb on - strand, within Ga0059261_0455at 440.537 kb on - strand, within Ga0059261_0455at 440.537 kb on - strand, within Ga0059261_0455at 440.537 kb on - strand, within Ga0059261_0455at 440.537 kb on - strandat 440.894 kb on + strand, within Ga0059261_0455at 440.895 kb on - strand, within Ga0059261_0455at 441.056 kb on + strandat 441.056 kb on + strandat 441.056 kb on + strandat 441.057 kb on - strandat 441.057 kb on - strandat 441.115 kb on + strandat 441.115 kb on + strandat 441.116 kb on - strandat 441.194 kb on + strandat 441.195 kb on - strand, within Ga0059261_0456at 441.203 kb on + strand, within Ga0059261_0456at 441.204 kb on - strand, within Ga0059261_0456at 441.204 kb on - strand, within Ga0059261_0456at 441.243 kb on + strand, within Ga0059261_0456at 441.244 kb on - strand, within Ga0059261_0456at 441.308 kb on + strand, within Ga0059261_0456at 441.308 kb on + strand, within Ga0059261_0456at 441.308 kb on + strand, within Ga0059261_0456at 441.309 kb on - strand, within Ga0059261_0456at 441.356 kb on + strand, within Ga0059261_0456at 441.356 kb on + strand, within Ga0059261_0456at 441.356 kb on + strand, within Ga0059261_0456at 441.356 kb on + strandat 441.356 kb on + strand, within Ga0059261_0456at 441.357 kb on - strand, within Ga0059261_0456at 441.357 kb on - strand, within Ga0059261_0456at 441.357 kb on - strand, within Ga0059261_0456at 441.357 kb on - strand, within Ga0059261_0456at 441.357 kb on - strand, within Ga0059261_0456at 441.357 kb on - strand, within Ga0059261_0456at 441.357 kb on - strand, within Ga0059261_0456at 441.428 kb on + strand, within Ga0059261_0456at 441.428 kb on + strand, within Ga0059261_0456at 441.463 kb on + strand, within Ga0059261_0456at 441.529 kb on + strand, within Ga0059261_0456at 441.529 kb on + strand, within Ga0059261_0456at 441.529 kb on + strand, within Ga0059261_0456at 441.529 kb on + strand, within Ga0059261_0456at 441.529 kb on + strand, within Ga0059261_0456at 441.530 kb on - strand, within Ga0059261_0456at 441.530 kb on - strand, within Ga0059261_0456at 441.530 kb on - strand, within Ga0059261_0456at 441.551 kb on - strand, within Ga0059261_0456at 441.607 kb on - strand, within Ga0059261_0456at 441.607 kb on - strand, within Ga0059261_0456at 441.625 kb on - strand, within Ga0059261_0456at 441.709 kb on + strand, within Ga0059261_0456at 441.709 kb on + strand, within Ga0059261_0456at 441.709 kb on + strand, within Ga0059261_0456at 441.709 kb on + strand, within Ga0059261_0456at 441.709 kb on + strand, within Ga0059261_0456at 441.710 kb on - strand, within Ga0059261_0456at 441.710 kb on - strand, within Ga0059261_0456at 441.710 kb on - strand, within Ga0059261_0456at 441.710 kb on - strand, within Ga0059261_0456at 441.710 kb on - strand, within Ga0059261_0456at 441.710 kb on - strand, within Ga0059261_0456at 441.710 kb on - strand, within Ga0059261_0456at 441.710 kb on - strand, within Ga0059261_0456at 441.747 kb on + strand, within Ga0059261_0456at 441.880 kb on + strandat 441.892 kb on + strandat 441.892 kb on + strandat 441.893 kb on - strandat 441.893 kb on - strandat 441.893 kb on - strandat 441.893 kb on - strandat 441.893 kb on - strandat 441.918 kb on + strandat 442.028 kb on - strandat 442.036 kb on + strandat 442.037 kb on - strandat 442.129 kb on - strandat 442.142 kb on + strandat 442.142 kb on + strandat 442.180 kb on - strandat 442.180 kb on - strandat 442.181 kb on + strandat 442.181 kb on + strandat 442.181 kb on + strandat 442.181 kb on + strandat 442.181 kb on + strandat 442.181 kb on + strandat 442.181 kb on + strandat 442.181 kb on + strandat 442.181 kb on + strandat 442.181 kb on + strandat 442.181 kb on + strandat 442.181 kb on + strandat 442.181 kb on + strandat 442.181 kb on + strandat 442.181 kb on + strandat 442.182 kb on - strandat 442.182 kb on - strandat 442.182 kb on - strandat 442.182 kb on - strandat 442.182 kb on - strandat 442.182 kb on - strandat 442.182 kb on - strandat 442.248 kb on + strandat 442.248 kb on + strandat 442.602 kb on + strand, within Ga0059261_0457at 442.891 kb on + strand, within Ga0059261_0457at 442.891 kb on + strand, within Ga0059261_0457at 442.891 kb on + strand, within Ga0059261_0457at 442.892 kb on - strand, within Ga0059261_0457at 442.892 kb on - strand, within Ga0059261_0457at 442.892 kb on - strand, within Ga0059261_0457

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins
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440,223 + -0.8
440,223 + +0.1
440,223 + -0.0
440,223 + +1.6
440,224 - +0.1
440,224 - -0.0
440,478 + Ga0059261_0455 0.27 +0.0
440,478 + Ga0059261_0455 0.27 +0.2
440,536 + Ga0059261_0455 0.35 +0.5
440,536 + Ga0059261_0455 0.35 +0.1
440,536 + Ga0059261_0455 0.35 -0.1
440,536 + Ga0059261_0455 0.35 -0.2
440,536 + Ga0059261_0455 0.35 +1.1
440,537 - Ga0059261_0455 0.35 -0.1
440,537 - Ga0059261_0455 0.35 -0.7
440,537 - Ga0059261_0455 0.35 +0.5
440,537 - Ga0059261_0455 0.35 +0.1
440,537 - Ga0059261_0455 0.35 +0.6
440,537 - Ga0059261_0455 0.35 -0.4
440,537 - Ga0059261_0455 0.35 +0.1
440,537 - -0.2
440,894 + Ga0059261_0455 0.83 -0.0
440,895 - Ga0059261_0455 0.83 +1.0
441,056 + +0.6
441,056 + -1.2
441,056 + +0.5
441,057 - +0.7
441,057 - -0.1
441,115 + -0.9
441,115 + -0.1
441,116 - +1.9
441,194 + +0.2
441,195 - Ga0059261_0456 0.12 +0.2
441,203 + Ga0059261_0456 0.13 +0.3
441,204 - Ga0059261_0456 0.13 +0.5
441,204 - Ga0059261_0456 0.13 +0.4
441,243 + Ga0059261_0456 0.18 +0.1
441,244 - Ga0059261_0456 0.18 -0.0
441,308 + Ga0059261_0456 0.26 -0.6
441,308 + Ga0059261_0456 0.26 +0.4
441,308 + Ga0059261_0456 0.26 +0.5
441,309 - Ga0059261_0456 0.26 -0.3
441,356 + Ga0059261_0456 0.32 +0.1
441,356 + Ga0059261_0456 0.32 +0.0
441,356 + Ga0059261_0456 0.32 -3.6
441,356 + -1.5
441,356 + Ga0059261_0456 0.32 +0.7
441,357 - Ga0059261_0456 0.32 +0.1
441,357 - Ga0059261_0456 0.32 +0.3
441,357 - Ga0059261_0456 0.32 -0.1
441,357 - Ga0059261_0456 0.32 +0.2
441,357 - Ga0059261_0456 0.32 +0.8
441,357 - Ga0059261_0456 0.32 -0.4
441,357 - Ga0059261_0456 0.32 -0.7
441,428 + Ga0059261_0456 0.40 +0.6
441,428 + Ga0059261_0456 0.40 -0.9
441,463 + Ga0059261_0456 0.44 +0.5
441,529 + Ga0059261_0456 0.52 -0.3
441,529 + Ga0059261_0456 0.52 -0.6
441,529 + Ga0059261_0456 0.52 +0.3
441,529 + Ga0059261_0456 0.52 +0.5
441,529 + Ga0059261_0456 0.52 +0.5
441,530 - Ga0059261_0456 0.52 +1.0
441,530 - Ga0059261_0456 0.52 -0.5
441,530 - Ga0059261_0456 0.52 +1.1
441,551 - Ga0059261_0456 0.55 -0.6
441,607 - Ga0059261_0456 0.61 +0.5
441,607 - Ga0059261_0456 0.61 -0.1
441,625 - Ga0059261_0456 0.64 -0.2
441,709 + Ga0059261_0456 0.74 +0.1
441,709 + Ga0059261_0456 0.74 -0.5
441,709 + Ga0059261_0456 0.74 +0.3
441,709 + Ga0059261_0456 0.74 +1.0
441,709 + Ga0059261_0456 0.74 -3.0
441,710 - Ga0059261_0456 0.74 +0.7
441,710 - Ga0059261_0456 0.74 -1.3
441,710 - Ga0059261_0456 0.74 +0.1
441,710 - Ga0059261_0456 0.74 -0.7
441,710 - Ga0059261_0456 0.74 -0.3
441,710 - Ga0059261_0456 0.74 +0.1
441,710 - Ga0059261_0456 0.74 +0.5
441,710 - Ga0059261_0456 0.74 +0.3
441,747 + Ga0059261_0456 0.78 -0.2
441,880 + -0.7
441,892 + -0.4
441,892 + -0.0
441,893 - +0.1
441,893 - +0.1
441,893 - -0.2
441,893 - -0.5
441,893 - -1.5
441,918 + +0.5
442,028 - +0.4
442,036 + -0.4
442,037 - -1.8
442,129 - -1.2
442,142 + -0.7
442,142 + -0.4
442,180 - -0.0
442,180 - +1.8
442,181 + -0.1
442,181 + -1.4
442,181 + -1.2
442,181 + +0.1
442,181 + -0.2
442,181 + +0.5
442,181 + +0.4
442,181 + +0.7
442,181 + +0.7
442,181 + -0.2
442,181 + +0.1
442,181 + -1.5
442,181 + -0.4
442,181 + -0.1
442,181 + +1.4
442,182 - -0.2
442,182 - -1.1
442,182 - +0.8
442,182 - +0.2
442,182 - -0.2
442,182 - +0.0
442,182 - +0.4
442,248 + +0.6
442,248 + -0.3
442,602 + Ga0059261_0457 0.24 +0.2
442,891 + Ga0059261_0457 0.36 -1.3
442,891 + Ga0059261_0457 0.36 -1.2
442,891 + Ga0059261_0457 0.36 -1.6
442,892 - Ga0059261_0457 0.36 +0.2
442,892 - Ga0059261_0457 0.36 -0.5
442,892 - Ga0059261_0457 0.36 +1.0

Or see this region's nucleotide sequence