Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11935

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11930 and BWI76_RS11935 are separated by 245 nucleotidesBWI76_RS11935 and BWI76_RS11940 are separated by 394 nucleotides BWI76_RS11930: BWI76_RS11930 - LysR family transcriptional regulator CysB, at 2,511,557 to 2,512,531 _RS11930 BWI76_RS11935: BWI76_RS11935 - YmiA family putative membrane protein, at 2,512,777 to 2,512,944 _RS11935 BWI76_RS11940: BWI76_RS11940 - aconitate hydratase 1, at 2,513,339 to 2,516,011 _RS11940 Position (kb) 2512 2513Strain fitness (log2 ratio) -2 -1 0 1at 2512.580 kb on - strandat 2512.681 kb on + strandat 2512.860 kb on + strand, within BWI76_RS11935at 2512.871 kb on + strand, within BWI76_RS11935at 2512.893 kb on + strand, within BWI76_RS11935at 2512.904 kb on + strand, within BWI76_RS11935at 2512.904 kb on + strandat 2512.910 kb on + strand, within BWI76_RS11935at 2512.949 kb on + strandat 2513.077 kb on + strandat 2513.131 kb on - strandat 2513.148 kb on + strandat 2513.151 kb on + strandat 2513.156 kb on - strandat 2513.159 kb on - strandat 2513.159 kb on - strandat 2513.159 kb on - strandat 2513.159 kb on - strandat 2513.159 kb on - strandat 2513.164 kb on - strandat 2513.173 kb on - strandat 2513.174 kb on + strandat 2513.174 kb on - strandat 2513.174 kb on - strandat 2513.174 kb on - strandat 2513.220 kb on + strandat 2513.234 kb on - strandat 2513.301 kb on + strandat 2513.310 kb on - strandat 2513.324 kb on + strandat 2513.326 kb on - strandat 2513.331 kb on - strandat 2513.332 kb on - strandat 2513.357 kb on - strandat 2513.380 kb on + strandat 2513.468 kb on + strandat 2513.889 kb on + strand, within BWI76_RS11940

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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2,512,580 - -0.1
2,512,681 + +0.1
2,512,860 + BWI76_RS11935 0.49 +0.3
2,512,871 + BWI76_RS11935 0.56 +0.3
2,512,893 + BWI76_RS11935 0.69 +0.0
2,512,904 + BWI76_RS11935 0.76 +0.2
2,512,904 + +0.9
2,512,910 + BWI76_RS11935 0.79 -2.0
2,512,949 + +0.4
2,513,077 + +0.2
2,513,131 - -0.1
2,513,148 + +0.7
2,513,151 + -0.9
2,513,156 - +0.5
2,513,159 - +0.2
2,513,159 - -0.4
2,513,159 - -0.1
2,513,159 - +0.7
2,513,159 - -1.3
2,513,164 - -0.3
2,513,173 - -1.1
2,513,174 + -0.2
2,513,174 - -0.5
2,513,174 - -0.1
2,513,174 - +0.1
2,513,220 + +0.3
2,513,234 - +0.8
2,513,301 + +0.0
2,513,310 - +0.4
2,513,324 + -2.0
2,513,326 - +0.4
2,513,331 - -0.1
2,513,332 - -0.2
2,513,357 - +0.0
2,513,380 + -0.3
2,513,468 + +0.2
2,513,889 + BWI76_RS11940 0.21 +0.0

Or see this region's nucleotide sequence