Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10590

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10580 and BWI76_RS10585 overlap by 20 nucleotidesBWI76_RS10585 and BWI76_RS10590 are separated by 10 nucleotidesBWI76_RS10590 and BWI76_RS10595 overlap by 4 nucleotides BWI76_RS10580: BWI76_RS10580 - amino acid ABC transporter permease, at 2,234,330 to 2,234,986 _RS10580 BWI76_RS10585: BWI76_RS10585 - amino acid ABC transporter ATP-binding protein, at 2,234,967 to 2,235,707 _RS10585 BWI76_RS10590: BWI76_RS10590 - class V aminotransferase, at 2,235,718 to 2,236,959 _RS10590 BWI76_RS10595: BWI76_RS10595 - allantoate amidohydrolase, at 2,236,956 to 2,238,218 _RS10595 Position (kb) 2235 2236 2237Strain fitness (log2 ratio) -2 -1 0 1at 2234.855 kb on - strand, within BWI76_RS10580at 2235.150 kb on - strandat 2235.161 kb on + strand, within BWI76_RS10585at 2235.391 kb on + strand, within BWI76_RS10585at 2235.650 kb on + strandat 2235.709 kb on + strandat 2235.765 kb on + strandat 2236.016 kb on + strand, within BWI76_RS10590at 2236.465 kb on + strand, within BWI76_RS10590at 2236.477 kb on + strand, within BWI76_RS10590at 2236.631 kb on - strand, within BWI76_RS10590at 2236.775 kb on + strand, within BWI76_RS10590at 2236.775 kb on + strandat 2236.797 kb on + strand, within BWI76_RS10590at 2236.818 kb on + strand, within BWI76_RS10590at 2236.818 kb on + strand, within BWI76_RS10590at 2236.873 kb on + strandat 2236.960 kb on + strandat 2237.139 kb on - strand, within BWI76_RS10595at 2237.192 kb on - strand, within BWI76_RS10595at 2237.402 kb on + strand, within BWI76_RS10595at 2237.518 kb on + strand, within BWI76_RS10595at 2237.603 kb on - strand, within BWI76_RS10595at 2237.660 kb on + strand, within BWI76_RS10595at 2237.826 kb on + strand, within BWI76_RS10595

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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2,234,855 - BWI76_RS10580 0.80 -0.3
2,235,150 - +0.9
2,235,161 + BWI76_RS10585 0.26 -0.4
2,235,391 + BWI76_RS10585 0.57 +0.7
2,235,650 + -0.1
2,235,709 + -0.7
2,235,765 + +0.1
2,236,016 + BWI76_RS10590 0.24 +0.3
2,236,465 + BWI76_RS10590 0.60 -0.5
2,236,477 + BWI76_RS10590 0.61 -0.5
2,236,631 - BWI76_RS10590 0.74 +0.1
2,236,775 + BWI76_RS10590 0.85 -0.6
2,236,775 + +0.3
2,236,797 + BWI76_RS10590 0.87 -0.2
2,236,818 + BWI76_RS10590 0.89 -1.9
2,236,818 + BWI76_RS10590 0.89 +0.1
2,236,873 + -0.0
2,236,960 + +0.7
2,237,139 - BWI76_RS10595 0.14 -0.0
2,237,192 - BWI76_RS10595 0.19 -0.2
2,237,402 + BWI76_RS10595 0.35 -0.1
2,237,518 + BWI76_RS10595 0.44 -0.2
2,237,603 - BWI76_RS10595 0.51 +0.0
2,237,660 + BWI76_RS10595 0.56 +0.0
2,237,826 + BWI76_RS10595 0.69 -2.4

Or see this region's nucleotide sequence