Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21740 and BPHYT_RS21745 are separated by 205 nucleotides BPHYT_RS21745 and BPHYT_RS21750 are separated by 189 nucleotides
BPHYT_RS21740: BPHYT_RS21740 - IclR family transcriptional regulator, at 433,809 to 434,645
_RS21740
BPHYT_RS21745: BPHYT_RS21745 - choline dehydrogenase, at 434,851 to 436,506
_RS21745
BPHYT_RS21750: BPHYT_RS21750 - major facilitator transporter, at 436,696 to 438,006
_RS21750
Position (kb) 434
435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 434.097 kb on - strand, within BPHYT_RS21740 at 434.097 kb on - strand, within BPHYT_RS21740 at 434.263 kb on + strand, within BPHYT_RS21740 at 434.263 kb on + strand, within BPHYT_RS21740 at 434.456 kb on - strand at 434.715 kb on + strand at 435.043 kb on + strand, within BPHYT_RS21745 at 435.044 kb on - strand, within BPHYT_RS21745 at 435.136 kb on + strand, within BPHYT_RS21745 at 435.137 kb on - strand, within BPHYT_RS21745 at 435.137 kb on - strand, within BPHYT_RS21745 at 435.404 kb on - strand, within BPHYT_RS21745 at 435.452 kb on - strand, within BPHYT_RS21745 at 435.751 kb on + strand, within BPHYT_RS21745 at 435.752 kb on - strand, within BPHYT_RS21745 at 435.992 kb on - strand, within BPHYT_RS21745 at 436.082 kb on - strand, within BPHYT_RS21745 at 436.269 kb on + strand, within BPHYT_RS21745 at 436.392 kb on + strand at 436.583 kb on - strand at 436.583 kb on - strand at 436.608 kb on - strand at 436.659 kb on + strand at 436.696 kb on - strand at 437.116 kb on + strand, within BPHYT_RS21750 at 437.299 kb on + strand, within BPHYT_RS21750 at 437.432 kb on - strand, within BPHYT_RS21750
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 434,097 - BPHYT_RS21740 0.34 -0.3 434,097 - BPHYT_RS21740 0.34 -0.4 434,263 + BPHYT_RS21740 0.54 -0.4 434,263 + BPHYT_RS21740 0.54 -1.3 434,456 - -2.4 434,715 + -3.1 435,043 + BPHYT_RS21745 0.12 -0.0 435,044 - BPHYT_RS21745 0.12 -1.1 435,136 + BPHYT_RS21745 0.17 -0.7 435,137 - BPHYT_RS21745 0.17 -0.4 435,137 - BPHYT_RS21745 0.17 +0.0 435,404 - BPHYT_RS21745 0.33 -0.7 435,452 - BPHYT_RS21745 0.36 +0.4 435,751 + BPHYT_RS21745 0.54 -0.5 435,752 - BPHYT_RS21745 0.54 -1.5 435,992 - BPHYT_RS21745 0.69 -0.9 436,082 - BPHYT_RS21745 0.74 -1.9 436,269 + BPHYT_RS21745 0.86 -0.4 436,392 + +0.7 436,583 - -0.6 436,583 - +0.6 436,608 - -0.8 436,659 + -0.3 436,696 - -0.3 437,116 + BPHYT_RS21750 0.32 -0.8 437,299 + BPHYT_RS21750 0.46 -0.7 437,432 - BPHYT_RS21750 0.56 -0.7
Or see this region's nucleotide sequence