Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29215

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29210 and AO356_29215 are separated by 184 nucleotidesAO356_29215 and AO356_29220 overlap by 4 nucleotidesAO356_29220 and AO356_29225 are separated by 80 nucleotides AO356_29210: AO356_29210 - AAA family ATPase, at 6,792,786 to 6,794,777 _29210 AO356_29215: AO356_29215 - dehydrogenase, at 6,794,962 to 6,795,984 _29215 AO356_29220: AO356_29220 - hydroxypyruvate isomerase, at 6,795,981 to 6,796,772 _29220 AO356_29225: AO356_29225 - rhizopine-binding protein, at 6,796,853 to 6,797,779 _29225 Position (kb) 6794 6795 6796Strain fitness (log2 ratio) -1 0 1 2at 6794.172 kb on - strand, within AO356_29210at 6794.172 kb on - strand, within AO356_29210at 6794.214 kb on - strand, within AO356_29210at 6794.214 kb on - strand, within AO356_29210at 6794.311 kb on + strand, within AO356_29210at 6794.312 kb on - strand, within AO356_29210at 6794.312 kb on - strand, within AO356_29210at 6794.312 kb on - strand, within AO356_29210at 6794.414 kb on - strand, within AO356_29210at 6794.414 kb on - strand, within AO356_29210at 6794.414 kb on - strand, within AO356_29210at 6794.464 kb on + strand, within AO356_29210at 6794.464 kb on + strand, within AO356_29210at 6794.465 kb on - strand, within AO356_29210at 6794.465 kb on - strand, within AO356_29210at 6794.465 kb on - strand, within AO356_29210at 6794.734 kb on + strandat 6794.734 kb on + strandat 6794.735 kb on - strandat 6794.796 kb on + strandat 6795.110 kb on + strand, within AO356_29215at 6795.110 kb on + strand, within AO356_29215at 6795.111 kb on - strand, within AO356_29215at 6795.122 kb on + strand, within AO356_29215at 6795.122 kb on + strand, within AO356_29215at 6795.122 kb on + strand, within AO356_29215at 6795.122 kb on + strand, within AO356_29215at 6795.123 kb on - strand, within AO356_29215at 6795.586 kb on + strand, within AO356_29215at 6795.586 kb on + strand, within AO356_29215at 6795.587 kb on - strand, within AO356_29215at 6795.680 kb on - strand, within AO356_29215at 6795.680 kb on - strand, within AO356_29215at 6795.764 kb on - strand, within AO356_29215at 6795.826 kb on + strand, within AO356_29215at 6795.827 kb on - strand, within AO356_29215at 6795.827 kb on - strand, within AO356_29215at 6795.992 kb on - strandat 6796.090 kb on + strand, within AO356_29220at 6796.419 kb on - strand, within AO356_29220at 6796.522 kb on - strand, within AO356_29220at 6796.822 kb on + strandat 6796.822 kb on + strandat 6796.967 kb on + strand, within AO356_29225at 6796.968 kb on - strand, within AO356_29225at 6796.968 kb on - strand, within AO356_29225at 6796.968 kb on - strand, within AO356_29225at 6796.968 kb on - strand, within AO356_29225

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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6,794,172 - AO356_29210 0.70 +0.4
6,794,172 - AO356_29210 0.70 +0.6
6,794,214 - AO356_29210 0.72 +0.0
6,794,214 - AO356_29210 0.72 +0.1
6,794,311 + AO356_29210 0.77 -0.9
6,794,312 - AO356_29210 0.77 +1.0
6,794,312 - AO356_29210 0.77 +0.0
6,794,312 - AO356_29210 0.77 +0.1
6,794,414 - AO356_29210 0.82 -0.1
6,794,414 - AO356_29210 0.82 +1.2
6,794,414 - AO356_29210 0.82 -0.6
6,794,464 + AO356_29210 0.84 -0.8
6,794,464 + AO356_29210 0.84 -0.2
6,794,465 - AO356_29210 0.84 -0.1
6,794,465 - AO356_29210 0.84 +0.1
6,794,465 - AO356_29210 0.84 +0.5
6,794,734 + +0.8
6,794,734 + +1.0
6,794,735 - +0.9
6,794,796 + +0.5
6,795,110 + AO356_29215 0.14 -0.5
6,795,110 + AO356_29215 0.14 -0.1
6,795,111 - AO356_29215 0.15 -0.4
6,795,122 + AO356_29215 0.16 -0.5
6,795,122 + AO356_29215 0.16 +0.1
6,795,122 + AO356_29215 0.16 +0.9
6,795,122 + AO356_29215 0.16 +0.0
6,795,123 - AO356_29215 0.16 -0.0
6,795,586 + AO356_29215 0.61 -0.3
6,795,586 + AO356_29215 0.61 +0.5
6,795,587 - AO356_29215 0.61 +0.6
6,795,680 - AO356_29215 0.70 +0.3
6,795,680 - AO356_29215 0.70 -0.9
6,795,764 - AO356_29215 0.78 +0.0
6,795,826 + AO356_29215 0.84 -0.6
6,795,827 - AO356_29215 0.85 +0.3
6,795,827 - AO356_29215 0.85 +0.3
6,795,992 - -0.2
6,796,090 + AO356_29220 0.14 -1.1
6,796,419 - AO356_29220 0.55 +1.1
6,796,522 - AO356_29220 0.68 +0.2
6,796,822 + +0.2
6,796,822 + -0.1
6,796,967 + AO356_29225 0.12 -0.6
6,796,968 - AO356_29225 0.12 +1.9
6,796,968 - AO356_29225 0.12 +0.1
6,796,968 - AO356_29225 0.12 -0.9
6,796,968 - AO356_29225 0.12 -0.5

Or see this region's nucleotide sequence