Experiment: Minimal media pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23165 and AO353_23170 are separated by 13 nucleotides AO353_23170 and AO353_23175 overlap by 1 nucleotides AO353_23175 and AO353_23180 are separated by 28 nucleotides
AO353_23165: AO353_23165 - cupin, at 5,083,112 to 5,083,675
_23165
AO353_23170: AO353_23170 - short-chain dehydrogenase, at 5,083,689 to 5,084,453
_23170
AO353_23175: AO353_23175 - ABC transporter permease, at 5,084,453 to 5,085,229
_23175
AO353_23180: AO353_23180 - nitrate ABC transporter substrate-binding protein, at 5,085,258 to 5,086,259
_23180
Position (kb)
5084
5085
5086 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5083.474 kb on - strand, within AO353_23165 at 5083.474 kb on - strand, within AO353_23165 at 5083.474 kb on - strand, within AO353_23165 at 5083.474 kb on - strand, within AO353_23165 at 5083.474 kb on - strand, within AO353_23165 at 5083.474 kb on - strand, within AO353_23165 at 5083.507 kb on - strand, within AO353_23165 at 5083.539 kb on + strand, within AO353_23165 at 5083.539 kb on + strand, within AO353_23165 at 5083.664 kb on + strand at 5083.664 kb on + strand at 5083.664 kb on + strand at 5083.665 kb on - strand at 5083.665 kb on - strand at 5083.665 kb on - strand at 5083.669 kb on + strand at 5083.669 kb on + strand at 5083.669 kb on + strand at 5083.670 kb on - strand at 5083.670 kb on - strand at 5083.670 kb on - strand at 5083.670 kb on - strand at 5083.670 kb on - strand at 5083.670 kb on - strand at 5083.670 kb on - strand at 5083.699 kb on - strand at 5083.825 kb on + strand, within AO353_23170 at 5083.825 kb on + strand, within AO353_23170 at 5083.852 kb on + strand, within AO353_23170 at 5083.852 kb on + strand, within AO353_23170 at 5083.852 kb on + strand, within AO353_23170 at 5083.852 kb on + strand, within AO353_23170 at 5083.852 kb on + strand, within AO353_23170 at 5083.853 kb on - strand, within AO353_23170 at 5083.973 kb on - strand, within AO353_23170 at 5084.383 kb on + strand at 5084.484 kb on + strand at 5084.484 kb on + strand at 5084.484 kb on + strand at 5084.485 kb on - strand at 5084.485 kb on - strand at 5084.485 kb on - strand at 5084.531 kb on + strand, within AO353_23175 at 5084.531 kb on + strand, within AO353_23175 at 5084.531 kb on + strand, within AO353_23175 at 5084.532 kb on - strand, within AO353_23175 at 5084.532 kb on - strand, within AO353_23175 at 5084.532 kb on - strand, within AO353_23175 at 5084.810 kb on + strand, within AO353_23175 at 5084.810 kb on + strand, within AO353_23175 at 5084.810 kb on + strand, within AO353_23175 at 5084.810 kb on + strand, within AO353_23175 at 5084.810 kb on + strand, within AO353_23175 at 5084.810 kb on + strand, within AO353_23175 at 5084.811 kb on - strand, within AO353_23175 at 5084.811 kb on - strand, within AO353_23175 at 5084.811 kb on - strand, within AO353_23175 at 5084.811 kb on - strand, within AO353_23175 at 5084.811 kb on - strand, within AO353_23175 at 5084.865 kb on + strand, within AO353_23175 at 5084.895 kb on - strand, within AO353_23175 at 5084.895 kb on - strand, within AO353_23175 at 5084.940 kb on + strand, within AO353_23175 at 5084.940 kb on + strand, within AO353_23175 at 5085.214 kb on + strand at 5085.214 kb on + strand at 5085.214 kb on + strand at 5085.215 kb on - strand at 5085.215 kb on - strand at 5085.217 kb on + strand at 5085.238 kb on + strand at 5085.298 kb on + strand at 5085.298 kb on + strand at 5085.299 kb on - strand at 5085.299 kb on - strand at 5085.346 kb on + strand at 5085.346 kb on + strand at 5085.347 kb on - strand at 5085.409 kb on + strand, within AO353_23180 at 5085.409 kb on + strand, within AO353_23180 at 5085.410 kb on - strand, within AO353_23180 at 5085.410 kb on - strand, within AO353_23180 at 5085.410 kb on - strand, within AO353_23180 at 5085.424 kb on + strand, within AO353_23180 at 5085.424 kb on + strand, within AO353_23180 at 5085.467 kb on - strand, within AO353_23180 at 5085.799 kb on - strand, within AO353_23180 at 5085.817 kb on + strand, within AO353_23180 at 5085.817 kb on + strand, within AO353_23180 at 5085.817 kb on + strand, within AO353_23180 at 5085.818 kb on - strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.820 kb on + strand, within AO353_23180 at 5085.821 kb on - strand, within AO353_23180 at 5085.821 kb on - strand, within AO353_23180 at 5085.821 kb on - strand, within AO353_23180 at 5085.821 kb on - strand, within AO353_23180 at 5085.821 kb on - strand, within AO353_23180 at 5085.821 kb on - strand, within AO353_23180 at 5086.090 kb on + strand, within AO353_23180 at 5086.159 kb on + strand at 5086.159 kb on + strand at 5086.159 kb on + strand at 5086.159 kb on + strand at 5086.159 kb on + strand at 5086.159 kb on + strand at 5086.159 kb on + strand at 5086.160 kb on - strand at 5086.160 kb on - strand at 5086.160 kb on - strand at 5086.160 kb on - strand at 5086.160 kb on - strand at 5086.160 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH6 remove 5,083,474 - AO353_23165 0.64 +0.2 5,083,474 - AO353_23165 0.64 +0.9 5,083,474 - AO353_23165 0.64 -1.1 5,083,474 - AO353_23165 0.64 +0.6 5,083,474 - AO353_23165 0.64 -2.5 5,083,474 - AO353_23165 0.64 +1.1 5,083,507 - AO353_23165 0.70 +0.2 5,083,539 + AO353_23165 0.76 +1.2 5,083,539 + AO353_23165 0.76 +0.4 5,083,664 + -0.3 5,083,664 + -1.6 5,083,664 + +0.7 5,083,665 - +1.2 5,083,665 - +0.6 5,083,665 - -0.4 5,083,669 + +0.2 5,083,669 + -0.9 5,083,669 + -1.2 5,083,670 - +1.5 5,083,670 - -0.1 5,083,670 - -0.2 5,083,670 - -1.3 5,083,670 - +0.2 5,083,670 - +0.7 5,083,670 - +0.7 5,083,699 - +0.2 5,083,825 + AO353_23170 0.18 -0.2 5,083,825 + AO353_23170 0.18 -0.2 5,083,852 + AO353_23170 0.21 -0.2 5,083,852 + AO353_23170 0.21 +0.0 5,083,852 + AO353_23170 0.21 -1.7 5,083,852 + AO353_23170 0.21 -1.6 5,083,852 + AO353_23170 0.21 -1.1 5,083,853 - AO353_23170 0.21 -2.6 5,083,973 - AO353_23170 0.37 +1.0 5,084,383 + +0.2 5,084,484 + +1.2 5,084,484 + -1.0 5,084,484 + +0.2 5,084,485 - -0.5 5,084,485 - -0.3 5,084,485 - +0.8 5,084,531 + AO353_23175 0.10 -1.5 5,084,531 + AO353_23175 0.10 +3.6 5,084,531 + AO353_23175 0.10 +0.6 5,084,532 - AO353_23175 0.10 -0.7 5,084,532 - AO353_23175 0.10 +0.2 5,084,532 - AO353_23175 0.10 -0.3 5,084,810 + AO353_23175 0.46 -0.9 5,084,810 + AO353_23175 0.46 -0.9 5,084,810 + AO353_23175 0.46 +1.2 5,084,810 + AO353_23175 0.46 -0.1 5,084,810 + AO353_23175 0.46 +1.6 5,084,810 + AO353_23175 0.46 +1.2 5,084,811 - AO353_23175 0.46 +0.2 5,084,811 - AO353_23175 0.46 -0.4 5,084,811 - AO353_23175 0.46 +0.1 5,084,811 - AO353_23175 0.46 -0.6 5,084,811 - AO353_23175 0.46 -1.8 5,084,865 + AO353_23175 0.53 +1.1 5,084,895 - AO353_23175 0.57 -0.0 5,084,895 - AO353_23175 0.57 -1.2 5,084,940 + AO353_23175 0.63 +0.8 5,084,940 + AO353_23175 0.63 -1.9 5,085,214 + +0.2 5,085,214 + -0.5 5,085,214 + -1.2 5,085,215 - +0.2 5,085,215 - -0.9 5,085,217 + +0.3 5,085,238 + -0.6 5,085,298 + +0.5 5,085,298 + -1.8 5,085,299 - -0.3 5,085,299 - +0.4 5,085,346 + -0.6 5,085,346 + -0.9 5,085,347 - -0.6 5,085,409 + AO353_23180 0.15 +0.9 5,085,409 + AO353_23180 0.15 +0.6 5,085,410 - AO353_23180 0.15 -0.1 5,085,410 - AO353_23180 0.15 -1.2 5,085,410 - AO353_23180 0.15 +0.2 5,085,424 + AO353_23180 0.17 +1.1 5,085,424 + AO353_23180 0.17 -0.2 5,085,467 - AO353_23180 0.21 -1.3 5,085,799 - AO353_23180 0.54 -1.0 5,085,817 + AO353_23180 0.56 +0.2 5,085,817 + AO353_23180 0.56 -0.3 5,085,817 + AO353_23180 0.56 +0.8 5,085,818 - AO353_23180 0.56 +0.6 5,085,820 + AO353_23180 0.56 +0.7 5,085,820 + AO353_23180 0.56 +0.0 5,085,820 + AO353_23180 0.56 +0.7 5,085,820 + AO353_23180 0.56 -2.1 5,085,820 + AO353_23180 0.56 +1.1 5,085,820 + AO353_23180 0.56 -0.2 5,085,820 + AO353_23180 0.56 -0.8 5,085,820 + AO353_23180 0.56 -2.1 5,085,821 - AO353_23180 0.56 -1.1 5,085,821 - AO353_23180 0.56 -0.6 5,085,821 - AO353_23180 0.56 -0.8 5,085,821 - AO353_23180 0.56 -2.3 5,085,821 - AO353_23180 0.56 -2.7 5,085,821 - AO353_23180 0.56 -1.6 5,086,090 + AO353_23180 0.83 -1.3 5,086,159 + +0.8 5,086,159 + +0.2 5,086,159 + +1.7 5,086,159 + +0.2 5,086,159 + -0.3 5,086,159 + -1.6 5,086,159 + -0.5 5,086,160 - -1.1 5,086,160 - -1.8 5,086,160 - -1.8 5,086,160 - +1.7 5,086,160 - -2.3 5,086,160 - -0.2
Or see this region's nucleotide sequence