Experiment: Minimal media pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21690 and AO353_21695 are separated by 77 nucleotides AO353_21695 and AO353_21700 are separated by 77 nucleotides AO353_21700 and AO353_21705 are separated by 172 nucleotides
AO353_21690: AO353_21690 - 2,4-dienoyl-CoA reductase, at 4,757,258 to 4,758,481
_21690
AO353_21695: AO353_21695 - MerR family transcriptional regulator, at 4,758,559 to 4,758,966
_21695
AO353_21700: AO353_21700 - thioredoxin, at 4,759,044 to 4,759,466
_21700
AO353_21705: AO353_21705 - hypothetical protein, at 4,759,639 to 4,760,052
_21705
Position (kb)
4758
4759 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4757.643 kb on + strand, within AO353_21690 at 4757.643 kb on + strand, within AO353_21690 at 4757.644 kb on - strand, within AO353_21690 at 4757.644 kb on - strand, within AO353_21690 at 4757.644 kb on - strand, within AO353_21690 at 4757.703 kb on + strand, within AO353_21690 at 4757.703 kb on + strand, within AO353_21690 at 4757.703 kb on + strand, within AO353_21690 at 4757.703 kb on + strand, within AO353_21690 at 4757.703 kb on + strand, within AO353_21690 at 4757.703 kb on + strand, within AO353_21690 at 4757.703 kb on + strand, within AO353_21690 at 4757.703 kb on + strand, within AO353_21690 at 4757.704 kb on - strand, within AO353_21690 at 4757.704 kb on - strand, within AO353_21690 at 4757.961 kb on + strand, within AO353_21690 at 4757.962 kb on - strand, within AO353_21690 at 4757.962 kb on - strand, within AO353_21690 at 4758.266 kb on + strand, within AO353_21690 at 4758.267 kb on - strand, within AO353_21690 at 4758.267 kb on - strand, within AO353_21690 at 4758.267 kb on - strand, within AO353_21690 at 4758.267 kb on - strand, within AO353_21690 at 4758.267 kb on - strand, within AO353_21690 at 4758.267 kb on - strand, within AO353_21690 at 4758.305 kb on + strand, within AO353_21690 at 4758.305 kb on + strand, within AO353_21690 at 4758.305 kb on + strand, within AO353_21690 at 4758.305 kb on + strand, within AO353_21690 at 4758.305 kb on + strand, within AO353_21690 at 4758.306 kb on - strand, within AO353_21690 at 4758.306 kb on - strand, within AO353_21690 at 4758.306 kb on - strand, within AO353_21690 at 4758.306 kb on - strand, within AO353_21690 at 4758.306 kb on - strand, within AO353_21690 at 4758.496 kb on + strand at 4758.497 kb on - strand at 4758.513 kb on + strand at 4758.519 kb on + strand at 4758.617 kb on - strand, within AO353_21695 at 4759.191 kb on - strand, within AO353_21700 at 4759.231 kb on + strand, within AO353_21700 at 4759.231 kb on + strand, within AO353_21700 at 4759.231 kb on + strand, within AO353_21700 at 4759.286 kb on + strand, within AO353_21700 at 4759.297 kb on + strand, within AO353_21700 at 4759.297 kb on + strand, within AO353_21700 at 4759.297 kb on + strand, within AO353_21700 at 4759.297 kb on + strand, within AO353_21700 at 4759.297 kb on + strand, within AO353_21700 at 4759.298 kb on - strand, within AO353_21700 at 4759.298 kb on - strand, within AO353_21700 at 4759.298 kb on - strand, within AO353_21700 at 4759.316 kb on + strand, within AO353_21700 at 4759.317 kb on - strand, within AO353_21700 at 4759.318 kb on + strand, within AO353_21700 at 4759.318 kb on + strand, within AO353_21700 at 4759.319 kb on - strand, within AO353_21700 at 4759.319 kb on - strand, within AO353_21700 at 4759.319 kb on - strand, within AO353_21700 at 4759.342 kb on - strand, within AO353_21700 at 4759.366 kb on + strand, within AO353_21700 at 4759.366 kb on + strand, within AO353_21700 at 4759.388 kb on - strand, within AO353_21700 at 4759.388 kb on - strand, within AO353_21700 at 4759.388 kb on - strand, within AO353_21700 at 4759.406 kb on - strand, within AO353_21700 at 4759.471 kb on + strand at 4759.472 kb on - strand at 4759.472 kb on - strand at 4759.502 kb on + strand at 4759.502 kb on + strand at 4759.502 kb on + strand at 4759.502 kb on + strand at 4759.502 kb on + strand at 4759.502 kb on + strand at 4759.502 kb on + strand at 4759.502 kb on + strand at 4759.502 kb on + strand at 4759.503 kb on - strand at 4759.503 kb on - strand at 4759.503 kb on - strand at 4759.503 kb on - strand at 4759.506 kb on + strand at 4759.506 kb on + strand at 4759.506 kb on + strand at 4759.506 kb on + strand at 4759.507 kb on - strand at 4759.507 kb on - strand at 4759.507 kb on - strand at 4759.562 kb on + strand at 4759.563 kb on - strand at 4759.563 kb on - strand at 4759.563 kb on - strand at 4759.570 kb on - strand at 4759.903 kb on - strand, within AO353_21705 at 4759.915 kb on - strand, within AO353_21705 at 4759.915 kb on - strand, within AO353_21705 at 4759.915 kb on - strand, within AO353_21705 at 4759.925 kb on + strand, within AO353_21705 at 4759.926 kb on - strand, within AO353_21705 at 4759.926 kb on - strand, within AO353_21705 at 4759.944 kb on - strand, within AO353_21705 at 4759.956 kb on - strand, within AO353_21705
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH6 remove 4,757,643 + AO353_21690 0.31 -0.4 4,757,643 + AO353_21690 0.31 -0.3 4,757,644 - AO353_21690 0.32 +0.3 4,757,644 - AO353_21690 0.32 +0.4 4,757,644 - AO353_21690 0.32 -0.2 4,757,703 + AO353_21690 0.36 +0.7 4,757,703 + AO353_21690 0.36 +1.7 4,757,703 + AO353_21690 0.36 -0.4 4,757,703 + AO353_21690 0.36 +1.4 4,757,703 + AO353_21690 0.36 +1.9 4,757,703 + AO353_21690 0.36 -0.5 4,757,703 + AO353_21690 0.36 +0.8 4,757,703 + AO353_21690 0.36 -2.1 4,757,704 - AO353_21690 0.36 -0.0 4,757,704 - AO353_21690 0.36 +0.0 4,757,961 + AO353_21690 0.57 +0.1 4,757,962 - AO353_21690 0.58 +1.8 4,757,962 - AO353_21690 0.58 -0.6 4,758,266 + AO353_21690 0.82 +1.6 4,758,267 - AO353_21690 0.82 +0.6 4,758,267 - AO353_21690 0.82 -2.2 4,758,267 - AO353_21690 0.82 -1.6 4,758,267 - AO353_21690 0.82 -2.5 4,758,267 - AO353_21690 0.82 +0.6 4,758,267 - AO353_21690 0.82 +0.6 4,758,305 + AO353_21690 0.86 -1.0 4,758,305 + AO353_21690 0.86 +0.8 4,758,305 + AO353_21690 0.86 +3.4 4,758,305 + AO353_21690 0.86 -0.6 4,758,305 + AO353_21690 0.86 -2.0 4,758,306 - AO353_21690 0.86 +1.4 4,758,306 - AO353_21690 0.86 +1.1 4,758,306 - AO353_21690 0.86 +0.9 4,758,306 - AO353_21690 0.86 -1.0 4,758,306 - AO353_21690 0.86 -0.3 4,758,496 + -0.9 4,758,497 - +0.1 4,758,513 + -0.1 4,758,519 + -0.4 4,758,617 - AO353_21695 0.14 +0.4 4,759,191 - AO353_21700 0.35 -1.4 4,759,231 + AO353_21700 0.44 -1.3 4,759,231 + AO353_21700 0.44 -0.4 4,759,231 + AO353_21700 0.44 +0.4 4,759,286 + AO353_21700 0.57 +0.4 4,759,297 + AO353_21700 0.60 -0.0 4,759,297 + AO353_21700 0.60 +0.2 4,759,297 + AO353_21700 0.60 -1.0 4,759,297 + AO353_21700 0.60 -1.6 4,759,297 + AO353_21700 0.60 +1.9 4,759,298 - AO353_21700 0.60 +1.7 4,759,298 - AO353_21700 0.60 -0.1 4,759,298 - AO353_21700 0.60 +0.1 4,759,316 + AO353_21700 0.64 -0.1 4,759,317 - AO353_21700 0.65 +0.6 4,759,318 + AO353_21700 0.65 +0.4 4,759,318 + AO353_21700 0.65 +0.8 4,759,319 - AO353_21700 0.65 -1.6 4,759,319 - AO353_21700 0.65 +0.3 4,759,319 - AO353_21700 0.65 +0.9 4,759,342 - AO353_21700 0.70 -2.1 4,759,366 + AO353_21700 0.76 -0.6 4,759,366 + AO353_21700 0.76 +1.1 4,759,388 - AO353_21700 0.81 +0.0 4,759,388 - AO353_21700 0.81 -0.8 4,759,388 - AO353_21700 0.81 -0.9 4,759,406 - AO353_21700 0.86 -0.1 4,759,471 + -1.0 4,759,472 - -1.1 4,759,472 - +1.8 4,759,502 + -1.2 4,759,502 + -0.2 4,759,502 + +0.1 4,759,502 + -1.0 4,759,502 + +0.8 4,759,502 + -1.5 4,759,502 + -0.4 4,759,502 + -0.2 4,759,502 + -0.1 4,759,503 - +0.3 4,759,503 - -1.1 4,759,503 - -0.9 4,759,503 - -0.8 4,759,506 + +0.6 4,759,506 + -0.1 4,759,506 + -1.0 4,759,506 + -1.0 4,759,507 - +0.1 4,759,507 - -0.4 4,759,507 - -0.4 4,759,562 + -0.8 4,759,563 - +0.2 4,759,563 - -0.6 4,759,563 - +0.2 4,759,570 - -0.1 4,759,903 - AO353_21705 0.64 +0.1 4,759,915 - AO353_21705 0.67 +0.4 4,759,915 - AO353_21705 0.67 -0.6 4,759,915 - AO353_21705 0.67 +1.2 4,759,925 + AO353_21705 0.69 +0.4 4,759,926 - AO353_21705 0.69 +1.5 4,759,926 - AO353_21705 0.69 +0.8 4,759,944 - AO353_21705 0.74 +1.3 4,759,956 - AO353_21705 0.77 +1.4
Or see this region's nucleotide sequence