Experiment: antimonate 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6000 and Pf6N2E2_6001 are separated by 89 nucleotides Pf6N2E2_6001 and Pf6N2E2_6002 are separated by 131 nucleotides
Pf6N2E2_6000 - Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 6,816,772 to 6,818,916
_6000
Pf6N2E2_6001 - Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 6,819,006 to 6,819,740
_6001
Pf6N2E2_6002 - Magnesium and cobalt transport protein CorA, at 6,819,872 to 6,820,843
_6002
Position (kb)
6819
6820 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6818.298 kb on + strand, within Pf6N2E2_6000 at 6818.299 kb on - strand, within Pf6N2E2_6000 at 6818.299 kb on - strand, within Pf6N2E2_6000 at 6818.525 kb on - strand, within Pf6N2E2_6000 at 6818.525 kb on - strand, within Pf6N2E2_6000 at 6818.560 kb on + strand, within Pf6N2E2_6000 at 6818.560 kb on + strand, within Pf6N2E2_6000 at 6818.560 kb on + strand, within Pf6N2E2_6000 at 6818.561 kb on - strand, within Pf6N2E2_6000 at 6818.587 kb on + strand, within Pf6N2E2_6000 at 6818.588 kb on - strand, within Pf6N2E2_6000 at 6818.588 kb on - strand, within Pf6N2E2_6000 at 6818.588 kb on - strand, within Pf6N2E2_6000 at 6818.588 kb on - strand, within Pf6N2E2_6000 at 6818.699 kb on + strand, within Pf6N2E2_6000 at 6818.836 kb on + strand at 6818.978 kb on - strand at 6818.998 kb on + strand at 6819.005 kb on + strand at 6819.005 kb on + strand at 6819.006 kb on - strand at 6819.006 kb on - strand at 6819.013 kb on + strand at 6819.135 kb on + strand, within Pf6N2E2_6001 at 6819.135 kb on + strand, within Pf6N2E2_6001 at 6819.135 kb on + strand, within Pf6N2E2_6001 at 6819.135 kb on + strand, within Pf6N2E2_6001 at 6819.136 kb on - strand, within Pf6N2E2_6001 at 6819.136 kb on - strand, within Pf6N2E2_6001 at 6819.186 kb on + strand, within Pf6N2E2_6001 at 6819.186 kb on + strand, within Pf6N2E2_6001 at 6819.252 kb on + strand, within Pf6N2E2_6001 at 6819.252 kb on + strand, within Pf6N2E2_6001 at 6819.252 kb on + strand, within Pf6N2E2_6001 at 6819.253 kb on - strand, within Pf6N2E2_6001 at 6819.523 kb on - strand, within Pf6N2E2_6001 at 6819.580 kb on - strand, within Pf6N2E2_6001 at 6819.580 kb on - strand, within Pf6N2E2_6001 at 6819.630 kb on + strand, within Pf6N2E2_6001 at 6819.630 kb on + strand, within Pf6N2E2_6001 at 6819.630 kb on + strand, within Pf6N2E2_6001 at 6819.630 kb on + strand, within Pf6N2E2_6001 at 6819.630 kb on + strand, within Pf6N2E2_6001 at 6819.630 kb on + strand, within Pf6N2E2_6001 at 6819.630 kb on + strand, within Pf6N2E2_6001 at 6819.630 kb on + strand, within Pf6N2E2_6001 at 6819.631 kb on - strand, within Pf6N2E2_6001 at 6819.631 kb on - strand, within Pf6N2E2_6001 at 6819.631 kb on - strand, within Pf6N2E2_6001 at 6819.631 kb on - strand, within Pf6N2E2_6001 at 6819.633 kb on - strand, within Pf6N2E2_6001 at 6819.675 kb on - strand at 6819.675 kb on - strand at 6819.873 kb on + strand at 6819.873 kb on + strand at 6819.874 kb on - strand at 6819.928 kb on + strand at 6819.929 kb on - strand at 6819.929 kb on - strand at 6819.935 kb on + strand at 6819.935 kb on + strand at 6819.935 kb on + strand at 6819.936 kb on - strand at 6819.936 kb on - strand at 6819.936 kb on - strand at 6819.936 kb on - strand at 6819.936 kb on - strand at 6819.936 kb on - strand at 6819.954 kb on + strand at 6819.996 kb on + strand, within Pf6N2E2_6002 at 6819.996 kb on + strand, within Pf6N2E2_6002 at 6819.997 kb on - strand, within Pf6N2E2_6002 at 6819.997 kb on - strand, within Pf6N2E2_6002 at 6820.180 kb on - strand, within Pf6N2E2_6002 at 6820.180 kb on - strand, within Pf6N2E2_6002 at 6820.180 kb on - strand, within Pf6N2E2_6002 at 6820.274 kb on + strand, within Pf6N2E2_6002 at 6820.389 kb on + strand, within Pf6N2E2_6002 at 6820.389 kb on + strand, within Pf6N2E2_6002 at 6820.389 kb on + strand, within Pf6N2E2_6002 at 6820.390 kb on - strand, within Pf6N2E2_6002 at 6820.390 kb on - strand, within Pf6N2E2_6002 at 6820.524 kb on + strand, within Pf6N2E2_6002 at 6820.525 kb on - strand, within Pf6N2E2_6002 at 6820.525 kb on - strand, within Pf6N2E2_6002 at 6820.525 kb on - strand, within Pf6N2E2_6002 at 6820.544 kb on - strand, within Pf6N2E2_6002 at 6820.590 kb on + strand, within Pf6N2E2_6002 at 6820.591 kb on - strand, within Pf6N2E2_6002 at 6820.600 kb on + strand, within Pf6N2E2_6002 at 6820.740 kb on - strand, within Pf6N2E2_6002
Per-strain Table
Position Strand Gene LocusTag Fraction antimonate 0.005 M remove 6,818,298 + Pf6N2E2_6000 0.71 +1.5 6,818,299 - Pf6N2E2_6000 0.71 -0.1 6,818,299 - Pf6N2E2_6000 0.71 +0.3 6,818,525 - Pf6N2E2_6000 0.82 -0.0 6,818,525 - Pf6N2E2_6000 0.82 -1.1 6,818,560 + Pf6N2E2_6000 0.83 -0.4 6,818,560 + Pf6N2E2_6000 0.83 -0.9 6,818,560 + Pf6N2E2_6000 0.83 +0.7 6,818,561 - Pf6N2E2_6000 0.83 +0.1 6,818,587 + Pf6N2E2_6000 0.85 -0.2 6,818,588 - Pf6N2E2_6000 0.85 -1.3 6,818,588 - Pf6N2E2_6000 0.85 +0.7 6,818,588 - Pf6N2E2_6000 0.85 -0.0 6,818,588 - Pf6N2E2_6000 0.85 -0.5 6,818,699 + Pf6N2E2_6000 0.90 +0.4 6,818,836 + -0.9 6,818,978 - -0.0 6,818,998 + +1.2 6,819,005 + -0.7 6,819,005 + -0.7 6,819,006 - -0.5 6,819,006 - -2.0 6,819,013 + -0.2 6,819,135 + Pf6N2E2_6001 0.18 +1.8 6,819,135 + Pf6N2E2_6001 0.18 -1.3 6,819,135 + Pf6N2E2_6001 0.18 -1.3 6,819,135 + Pf6N2E2_6001 0.18 -3.1 6,819,136 - Pf6N2E2_6001 0.18 -1.3 6,819,136 - Pf6N2E2_6001 0.18 -0.5 6,819,186 + Pf6N2E2_6001 0.24 -1.0 6,819,186 + Pf6N2E2_6001 0.24 -1.8 6,819,252 + Pf6N2E2_6001 0.33 -0.8 6,819,252 + Pf6N2E2_6001 0.33 -0.5 6,819,252 + Pf6N2E2_6001 0.33 -0.8 6,819,253 - Pf6N2E2_6001 0.34 -0.2 6,819,523 - Pf6N2E2_6001 0.70 +0.6 6,819,580 - Pf6N2E2_6001 0.78 -0.9 6,819,580 - Pf6N2E2_6001 0.78 -2.8 6,819,630 + Pf6N2E2_6001 0.85 -2.6 6,819,630 + Pf6N2E2_6001 0.85 -1.1 6,819,630 + Pf6N2E2_6001 0.85 -0.8 6,819,630 + Pf6N2E2_6001 0.85 -1.1 6,819,630 + Pf6N2E2_6001 0.85 -1.6 6,819,630 + Pf6N2E2_6001 0.85 -0.8 6,819,630 + Pf6N2E2_6001 0.85 -0.1 6,819,630 + Pf6N2E2_6001 0.85 -1.2 6,819,631 - Pf6N2E2_6001 0.85 -1.7 6,819,631 - Pf6N2E2_6001 0.85 -0.4 6,819,631 - Pf6N2E2_6001 0.85 -1.2 6,819,631 - Pf6N2E2_6001 0.85 -1.7 6,819,633 - Pf6N2E2_6001 0.85 -0.3 6,819,675 - -0.2 6,819,675 - -1.4 6,819,873 + -0.5 6,819,873 + +1.4 6,819,874 - +0.6 6,819,928 + -1.9 6,819,929 - -0.4 6,819,929 - +0.3 6,819,935 + -1.5 6,819,935 + +0.1 6,819,935 + -0.0 6,819,936 - +1.1 6,819,936 - +0.3 6,819,936 - -0.0 6,819,936 - +2.2 6,819,936 - -0.5 6,819,936 - -0.3 6,819,954 + -1.2 6,819,996 + Pf6N2E2_6002 0.13 +0.2 6,819,996 + Pf6N2E2_6002 0.13 +0.6 6,819,997 - Pf6N2E2_6002 0.13 -0.8 6,819,997 - Pf6N2E2_6002 0.13 -0.0 6,820,180 - Pf6N2E2_6002 0.32 -0.6 6,820,180 - Pf6N2E2_6002 0.32 +0.8 6,820,180 - Pf6N2E2_6002 0.32 -1.2 6,820,274 + Pf6N2E2_6002 0.41 +0.5 6,820,389 + Pf6N2E2_6002 0.53 +0.5 6,820,389 + Pf6N2E2_6002 0.53 +0.9 6,820,389 + Pf6N2E2_6002 0.53 -0.7 6,820,390 - Pf6N2E2_6002 0.53 +1.4 6,820,390 - Pf6N2E2_6002 0.53 -0.0 6,820,524 + Pf6N2E2_6002 0.67 -0.0 6,820,525 - Pf6N2E2_6002 0.67 +1.2 6,820,525 - Pf6N2E2_6002 0.67 +0.3 6,820,525 - Pf6N2E2_6002 0.67 -0.0 6,820,544 - Pf6N2E2_6002 0.69 +1.2 6,820,590 + Pf6N2E2_6002 0.74 -3.2 6,820,591 - Pf6N2E2_6002 0.74 -0.4 6,820,600 + Pf6N2E2_6002 0.75 -1.3 6,820,740 - Pf6N2E2_6002 0.89 -0.0
Or see this region's nucleotide sequence