Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3306

Experiment: antimonate 0.005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3306 and Pf6N2E2_3307 are separated by 255 nucleotides Pf6N2E2_3306 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 3,816,889 to 3,818,490 _3306 Pf6N2E2_3307 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 3,818,746 to 3,820,371 _3307 Position (kb) 3816 3817 3818 3819Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3815.909 kb on + strandat 3815.909 kb on + strandat 3815.909 kb on + strandat 3815.909 kb on + strandat 3815.909 kb on + strandat 3815.910 kb on - strandat 3815.910 kb on - strandat 3815.953 kb on - strandat 3815.961 kb on + strandat 3815.961 kb on + strandat 3815.961 kb on + strandat 3815.961 kb on + strandat 3815.961 kb on + strandat 3815.962 kb on - strandat 3815.962 kb on - strandat 3815.962 kb on - strandat 3815.964 kb on + strandat 3815.964 kb on + strandat 3815.964 kb on + strandat 3815.964 kb on + strandat 3815.964 kb on + strandat 3815.965 kb on - strandat 3815.965 kb on - strandat 3815.992 kb on + strandat 3815.992 kb on + strandat 3815.992 kb on + strandat 3815.993 kb on - strandat 3815.993 kb on - strandat 3815.993 kb on - strandat 3816.000 kb on + strandat 3816.000 kb on + strandat 3816.000 kb on + strandat 3816.000 kb on + strandat 3816.000 kb on + strandat 3816.001 kb on - strandat 3816.001 kb on - strandat 3816.001 kb on - strandat 3816.001 kb on - strandat 3816.001 kb on - strandat 3816.017 kb on + strandat 3816.017 kb on + strandat 3816.017 kb on + strandat 3816.018 kb on - strandat 3816.018 kb on - strandat 3816.018 kb on - strandat 3816.020 kb on + strandat 3816.071 kb on + strandat 3816.071 kb on + strandat 3816.072 kb on - strandat 3816.099 kb on + strandat 3816.099 kb on + strandat 3816.099 kb on + strandat 3816.099 kb on + strandat 3816.100 kb on - strandat 3816.100 kb on - strandat 3816.100 kb on - strandat 3816.100 kb on - strandat 3816.100 kb on - strandat 3816.100 kb on - strandat 3816.159 kb on + strandat 3816.159 kb on + strandat 3816.160 kb on - strandat 3816.160 kb on - strandat 3816.160 kb on - strandat 3816.160 kb on - strandat 3816.346 kb on + strandat 3816.395 kb on + strandat 3816.442 kb on + strandat 3816.490 kb on - strandat 3816.498 kb on + strandat 3816.502 kb on + strandat 3816.503 kb on - strandat 3816.503 kb on - strandat 3816.503 kb on - strandat 3816.665 kb on + strandat 3816.665 kb on + strandat 3816.706 kb on + strandat 3816.710 kb on + strandat 3816.732 kb on + strandat 3816.732 kb on + strandat 3816.732 kb on + strandat 3816.732 kb on + strandat 3816.732 kb on + strandat 3816.732 kb on + strandat 3816.736 kb on + strandat 3816.736 kb on + strandat 3816.736 kb on + strandat 3816.736 kb on + strandat 3816.736 kb on + strandat 3816.737 kb on - strandat 3816.737 kb on - strandat 3816.737 kb on - strandat 3816.737 kb on - strandat 3816.737 kb on - strandat 3816.737 kb on - strandat 3816.737 kb on - strandat 3816.789 kb on + strandat 3816.792 kb on - strandat 3816.852 kb on - strandat 3816.852 kb on - strandat 3816.976 kb on + strandat 3816.977 kb on - strandat 3817.018 kb on + strandat 3817.018 kb on + strandat 3817.018 kb on + strandat 3817.018 kb on + strandat 3817.018 kb on + strandat 3817.019 kb on - strandat 3817.019 kb on - strandat 3817.019 kb on - strandat 3817.175 kb on + strand, within Pf6N2E2_3306at 3817.195 kb on + strand, within Pf6N2E2_3306at 3817.196 kb on - strand, within Pf6N2E2_3306at 3817.286 kb on - strand, within Pf6N2E2_3306at 3817.303 kb on + strand, within Pf6N2E2_3306at 3817.555 kb on + strand, within Pf6N2E2_3306at 3817.574 kb on - strand, within Pf6N2E2_3306at 3817.771 kb on + strand, within Pf6N2E2_3306at 3817.771 kb on + strand, within Pf6N2E2_3306at 3817.772 kb on - strand, within Pf6N2E2_3306at 3817.862 kb on - strand, within Pf6N2E2_3306at 3817.967 kb on + strand, within Pf6N2E2_3306at 3817.995 kb on + strand, within Pf6N2E2_3306at 3818.009 kb on + strand, within Pf6N2E2_3306at 3818.009 kb on + strand, within Pf6N2E2_3306at 3818.116 kb on + strand, within Pf6N2E2_3306at 3818.116 kb on + strand, within Pf6N2E2_3306at 3818.116 kb on + strand, within Pf6N2E2_3306at 3818.116 kb on + strand, within Pf6N2E2_3306at 3818.116 kb on + strand, within Pf6N2E2_3306at 3818.116 kb on + strand, within Pf6N2E2_3306at 3818.117 kb on - strand, within Pf6N2E2_3306at 3818.117 kb on - strand, within Pf6N2E2_3306at 3818.117 kb on - strand, within Pf6N2E2_3306at 3818.117 kb on - strand, within Pf6N2E2_3306at 3818.117 kb on - strand, within Pf6N2E2_3306at 3818.117 kb on - strand, within Pf6N2E2_3306at 3818.131 kb on + strand, within Pf6N2E2_3306at 3818.131 kb on + strand, within Pf6N2E2_3306at 3818.131 kb on + strand, within Pf6N2E2_3306at 3818.131 kb on + strand, within Pf6N2E2_3306at 3818.131 kb on + strand, within Pf6N2E2_3306at 3818.174 kb on - strand, within Pf6N2E2_3306at 3818.224 kb on + strand, within Pf6N2E2_3306at 3818.224 kb on + strand, within Pf6N2E2_3306at 3818.224 kb on + strand, within Pf6N2E2_3306at 3818.224 kb on + strand, within Pf6N2E2_3306at 3818.225 kb on - strand, within Pf6N2E2_3306at 3818.225 kb on - strand, within Pf6N2E2_3306at 3818.250 kb on + strand, within Pf6N2E2_3306at 3818.250 kb on + strand, within Pf6N2E2_3306at 3818.250 kb on + strand, within Pf6N2E2_3306at 3818.251 kb on - strand, within Pf6N2E2_3306at 3818.251 kb on - strand, within Pf6N2E2_3306at 3818.251 kb on - strand, within Pf6N2E2_3306at 3818.254 kb on + strand, within Pf6N2E2_3306at 3818.254 kb on + strand, within Pf6N2E2_3306at 3818.254 kb on + strand, within Pf6N2E2_3306at 3818.254 kb on + strand, within Pf6N2E2_3306at 3818.255 kb on - strand, within Pf6N2E2_3306at 3818.255 kb on - strand, within Pf6N2E2_3306at 3818.255 kb on - strand, within Pf6N2E2_3306at 3818.255 kb on - strand, within Pf6N2E2_3306at 3818.255 kb on - strand, within Pf6N2E2_3306at 3818.278 kb on + strand, within Pf6N2E2_3306at 3818.278 kb on + strand, within Pf6N2E2_3306at 3818.279 kb on - strand, within Pf6N2E2_3306at 3818.336 kb on + strandat 3818.337 kb on - strandat 3818.337 kb on - strandat 3818.391 kb on + strandat 3818.415 kb on - strandat 3818.467 kb on + strandat 3818.468 kb on - strandat 3818.468 kb on - strandat 3818.488 kb on + strandat 3818.488 kb on + strandat 3818.488 kb on + strandat 3818.489 kb on - strandat 3818.489 kb on - strandat 3818.489 kb on - strandat 3818.489 kb on - strandat 3818.608 kb on - strandat 3818.608 kb on - strandat 3818.613 kb on - strandat 3818.613 kb on - strandat 3818.677 kb on + strandat 3818.677 kb on + strandat 3818.677 kb on + strandat 3818.677 kb on + strandat 3818.677 kb on + strandat 3818.677 kb on + strandat 3818.677 kb on + strandat 3818.677 kb on + strandat 3818.677 kb on + strandat 3818.677 kb on + strandat 3818.677 kb on + strandat 3818.677 kb on + strandat 3818.677 kb on + strandat 3818.678 kb on - strandat 3818.678 kb on - strandat 3818.678 kb on - strandat 3818.678 kb on - strandat 3818.678 kb on - strandat 3818.678 kb on - strandat 3818.678 kb on - strandat 3818.682 kb on - strandat 3818.752 kb on - strandat 3818.752 kb on - strandat 3818.789 kb on + strandat 3818.790 kb on - strandat 3818.790 kb on - strandat 3818.790 kb on - strandat 3818.793 kb on - strandat 3818.823 kb on + strandat 3818.876 kb on - strandat 3818.876 kb on - strandat 3818.986 kb on - strand, within Pf6N2E2_3307at 3819.007 kb on + strand, within Pf6N2E2_3307at 3819.007 kb on + strand, within Pf6N2E2_3307at 3819.008 kb on - strand, within Pf6N2E2_3307at 3819.008 kb on - strand, within Pf6N2E2_3307at 3819.008 kb on - strand, within Pf6N2E2_3307at 3819.008 kb on - strand, within Pf6N2E2_3307at 3819.008 kb on - strand, within Pf6N2E2_3307at 3819.008 kb on - strand, within Pf6N2E2_3307at 3819.008 kb on - strand, within Pf6N2E2_3307at 3819.052 kb on + strand, within Pf6N2E2_3307at 3819.053 kb on - strand, within Pf6N2E2_3307at 3819.053 kb on - strand, within Pf6N2E2_3307at 3819.053 kb on - strand, within Pf6N2E2_3307at 3819.305 kb on - strand, within Pf6N2E2_3307at 3819.412 kb on + strand, within Pf6N2E2_3307at 3819.412 kb on + strand, within Pf6N2E2_3307at 3819.430 kb on + strand, within Pf6N2E2_3307at 3819.431 kb on - strand, within Pf6N2E2_3307at 3819.431 kb on - strand, within Pf6N2E2_3307at 3819.431 kb on - strand, within Pf6N2E2_3307

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Per-strain Table

Position Strand Gene LocusTag Fraction antimonate 0.005 M
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3,815,909 + +0.0
3,815,909 + -0.7
3,815,909 + -0.2
3,815,909 + +0.3
3,815,909 + -0.4
3,815,910 - +2.8
3,815,910 - +2.1
3,815,953 - -0.2
3,815,961 + +1.4
3,815,961 + +0.3
3,815,961 + +0.2
3,815,961 + +0.4
3,815,961 + +0.9
3,815,962 - +0.9
3,815,962 - +1.0
3,815,962 - +1.1
3,815,964 + +0.4
3,815,964 + -0.4
3,815,964 + +0.8
3,815,964 + -0.1
3,815,964 + -0.2
3,815,965 - -1.2
3,815,965 - -0.6
3,815,992 + +0.9
3,815,992 + +0.3
3,815,992 + -1.4
3,815,993 - -0.2
3,815,993 - -1.4
3,815,993 - +0.5
3,816,000 + -0.8
3,816,000 + +0.2
3,816,000 + -1.4
3,816,000 + +0.5
3,816,000 + -0.1
3,816,001 - +0.6
3,816,001 - +0.1
3,816,001 - -0.4
3,816,001 - +0.2
3,816,001 - -0.8
3,816,017 + +0.2
3,816,017 + +1.0
3,816,017 + +0.3
3,816,018 - -1.4
3,816,018 - +0.6
3,816,018 - -0.4
3,816,020 + +1.3
3,816,071 + +0.1
3,816,071 + +0.1
3,816,072 - +0.2
3,816,099 + +0.9
3,816,099 + +0.5
3,816,099 + -0.4
3,816,099 + -0.3
3,816,100 - +0.4
3,816,100 - +1.5
3,816,100 - +0.1
3,816,100 - +0.1
3,816,100 - +0.6
3,816,100 - +0.7
3,816,159 + -1.1
3,816,159 + -1.2
3,816,160 - +0.7
3,816,160 - +0.1
3,816,160 - +1.6
3,816,160 - -0.1
3,816,346 + -0.1
3,816,395 + -0.0
3,816,442 + +0.4
3,816,490 - -0.5
3,816,498 + -0.1
3,816,502 + +0.1
3,816,503 - -1.6
3,816,503 - +1.2
3,816,503 - +0.8
3,816,665 + +1.2
3,816,665 + +1.3
3,816,706 + -0.1
3,816,710 + +2.2
3,816,732 + -0.3
3,816,732 + -0.5
3,816,732 + -0.6
3,816,732 + +1.1
3,816,732 + +0.2
3,816,732 + +0.1
3,816,736 + -0.2
3,816,736 + -0.1
3,816,736 + -0.8
3,816,736 + -1.9
3,816,736 + -0.6
3,816,737 - -1.1
3,816,737 - +1.4
3,816,737 - -0.4
3,816,737 - +1.2
3,816,737 - -0.1
3,816,737 - -0.3
3,816,737 - +0.2
3,816,789 + +1.5
3,816,792 - -0.2
3,816,852 - +0.7
3,816,852 - +0.1
3,816,976 + +1.4
3,816,977 - +1.3
3,817,018 + +0.3
3,817,018 + -0.0
3,817,018 + -1.3
3,817,018 + -0.1
3,817,018 + +2.7
3,817,019 - -0.3
3,817,019 - +0.1
3,817,019 - +0.7
3,817,175 + Pf6N2E2_3306 0.18 +1.7
3,817,195 + Pf6N2E2_3306 0.19 +0.6
3,817,196 - Pf6N2E2_3306 0.19 -0.2
3,817,286 - Pf6N2E2_3306 0.25 -1.1
3,817,303 + Pf6N2E2_3306 0.26 -0.5
3,817,555 + Pf6N2E2_3306 0.42 +0.5
3,817,574 - Pf6N2E2_3306 0.43 +0.4
3,817,771 + Pf6N2E2_3306 0.55 -0.8
3,817,771 + Pf6N2E2_3306 0.55 -0.9
3,817,772 - Pf6N2E2_3306 0.55 +0.6
3,817,862 - Pf6N2E2_3306 0.61 -1.9
3,817,967 + Pf6N2E2_3306 0.67 +0.3
3,817,995 + Pf6N2E2_3306 0.69 +0.6
3,818,009 + Pf6N2E2_3306 0.70 -0.8
3,818,009 + Pf6N2E2_3306 0.70 +1.0
3,818,116 + Pf6N2E2_3306 0.77 +0.2
3,818,116 + Pf6N2E2_3306 0.77 -0.4
3,818,116 + Pf6N2E2_3306 0.77 -1.1
3,818,116 + Pf6N2E2_3306 0.77 +1.3
3,818,116 + Pf6N2E2_3306 0.77 +0.5
3,818,116 + Pf6N2E2_3306 0.77 -0.9
3,818,117 - Pf6N2E2_3306 0.77 +0.2
3,818,117 - Pf6N2E2_3306 0.77 +0.4
3,818,117 - Pf6N2E2_3306 0.77 -0.2
3,818,117 - Pf6N2E2_3306 0.77 +0.2
3,818,117 - Pf6N2E2_3306 0.77 -0.6
3,818,117 - Pf6N2E2_3306 0.77 -0.5
3,818,131 + Pf6N2E2_3306 0.78 +0.8
3,818,131 + Pf6N2E2_3306 0.78 +0.7
3,818,131 + Pf6N2E2_3306 0.78 -0.2
3,818,131 + Pf6N2E2_3306 0.78 +1.2
3,818,131 + Pf6N2E2_3306 0.78 -1.3
3,818,174 - Pf6N2E2_3306 0.80 -0.9
3,818,224 + Pf6N2E2_3306 0.83 -0.1
3,818,224 + Pf6N2E2_3306 0.83 -0.4
3,818,224 + Pf6N2E2_3306 0.83 +0.9
3,818,224 + Pf6N2E2_3306 0.83 -0.6
3,818,225 - Pf6N2E2_3306 0.83 -0.5
3,818,225 - Pf6N2E2_3306 0.83 -0.5
3,818,250 + Pf6N2E2_3306 0.85 +0.8
3,818,250 + Pf6N2E2_3306 0.85 -0.8
3,818,250 + Pf6N2E2_3306 0.85 +0.4
3,818,251 - Pf6N2E2_3306 0.85 +0.1
3,818,251 - Pf6N2E2_3306 0.85 -0.1
3,818,251 - Pf6N2E2_3306 0.85 +0.7
3,818,254 + Pf6N2E2_3306 0.85 +0.0
3,818,254 + Pf6N2E2_3306 0.85 +0.5
3,818,254 + Pf6N2E2_3306 0.85 +0.2
3,818,254 + Pf6N2E2_3306 0.85 +0.3
3,818,255 - Pf6N2E2_3306 0.85 -1.1
3,818,255 - Pf6N2E2_3306 0.85 -0.9
3,818,255 - Pf6N2E2_3306 0.85 +0.1
3,818,255 - Pf6N2E2_3306 0.85 +0.2
3,818,255 - Pf6N2E2_3306 0.85 +0.0
3,818,278 + Pf6N2E2_3306 0.87 -0.3
3,818,278 + Pf6N2E2_3306 0.87 +0.1
3,818,279 - Pf6N2E2_3306 0.87 +0.2
3,818,336 + +0.2
3,818,337 - -0.1
3,818,337 - +0.9
3,818,391 + -0.6
3,818,415 - +0.4
3,818,467 + -0.1
3,818,468 - +1.0
3,818,468 - +0.2
3,818,488 + -1.0
3,818,488 + +0.5
3,818,488 + +0.6
3,818,489 - -0.4
3,818,489 - +0.4
3,818,489 - -1.7
3,818,489 - +1.0
3,818,608 - +0.6
3,818,608 - -0.2
3,818,613 - +0.9
3,818,613 - +0.2
3,818,677 + -1.2
3,818,677 + +0.0
3,818,677 + -0.0
3,818,677 + -0.5
3,818,677 + +0.4
3,818,677 + -0.3
3,818,677 + -0.8
3,818,677 + +0.6
3,818,677 + +1.9
3,818,677 + +0.7
3,818,677 + -0.7
3,818,677 + -0.2
3,818,677 + -0.2
3,818,678 - -1.3
3,818,678 - -0.7
3,818,678 - +0.4
3,818,678 - -0.7
3,818,678 - +0.0
3,818,678 - +0.6
3,818,678 - -0.1
3,818,682 - +0.5
3,818,752 - +0.5
3,818,752 - +0.2
3,818,789 + +1.1
3,818,790 - +1.1
3,818,790 - +0.5
3,818,790 - -0.5
3,818,793 - +0.5
3,818,823 + +0.4
3,818,876 - -0.5
3,818,876 - -0.1
3,818,986 - Pf6N2E2_3307 0.15 +0.7
3,819,007 + Pf6N2E2_3307 0.16 +1.0
3,819,007 + Pf6N2E2_3307 0.16 -0.1
3,819,008 - Pf6N2E2_3307 0.16 -0.6
3,819,008 - Pf6N2E2_3307 0.16 +0.3
3,819,008 - Pf6N2E2_3307 0.16 -0.2
3,819,008 - Pf6N2E2_3307 0.16 +0.1
3,819,008 - Pf6N2E2_3307 0.16 +0.1
3,819,008 - Pf6N2E2_3307 0.16 +0.7
3,819,008 - Pf6N2E2_3307 0.16 +1.2
3,819,052 + Pf6N2E2_3307 0.19 -0.1
3,819,053 - Pf6N2E2_3307 0.19 +0.4
3,819,053 - Pf6N2E2_3307 0.19 +0.8
3,819,053 - Pf6N2E2_3307 0.19 +2.2
3,819,305 - Pf6N2E2_3307 0.34 +0.8
3,819,412 + Pf6N2E2_3307 0.41 -0.4
3,819,412 + Pf6N2E2_3307 0.41 +1.0
3,819,430 + Pf6N2E2_3307 0.42 +1.5
3,819,431 - Pf6N2E2_3307 0.42 +0.9
3,819,431 - Pf6N2E2_3307 0.42 -0.2
3,819,431 - Pf6N2E2_3307 0.42 +0.7

Or see this region's nucleotide sequence