Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3232

Experiment: antimonate 0.005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3230 and Pf6N2E2_3231 are separated by 10 nucleotidesPf6N2E2_3231 and Pf6N2E2_3232 overlap by 1 nucleotidesPf6N2E2_3232 and Pf6N2E2_3233 are separated by 34 nucleotides Pf6N2E2_3230 - Putative glutathione transporter, ATP-binding component, at 3,734,755 to 3,735,594 _3230 Pf6N2E2_3231 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 3,735,605 to 3,736,507 _3231 Pf6N2E2_3232 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 3,736,507 to 3,737,544 _3232 Pf6N2E2_3233 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 3,737,579 to 3,739,201 _3233 Position (kb) 3736 3737 3738Strain fitness (log2 ratio) -1 0 1 2at 3735.571 kb on + strandat 3735.583 kb on + strandat 3735.584 kb on - strandat 3735.726 kb on + strand, within Pf6N2E2_3231at 3735.727 kb on - strand, within Pf6N2E2_3231at 3735.727 kb on - strand, within Pf6N2E2_3231at 3735.727 kb on - strand, within Pf6N2E2_3231at 3736.200 kb on + strand, within Pf6N2E2_3231at 3736.200 kb on + strand, within Pf6N2E2_3231at 3736.200 kb on + strand, within Pf6N2E2_3231at 3736.200 kb on + strand, within Pf6N2E2_3231at 3736.201 kb on - strand, within Pf6N2E2_3231at 3736.201 kb on - strand, within Pf6N2E2_3231at 3736.201 kb on - strand, within Pf6N2E2_3231at 3736.201 kb on - strand, within Pf6N2E2_3231at 3736.222 kb on - strand, within Pf6N2E2_3231at 3736.222 kb on - strand, within Pf6N2E2_3231at 3736.251 kb on + strand, within Pf6N2E2_3231at 3736.252 kb on - strand, within Pf6N2E2_3231at 3736.457 kb on - strandat 3736.535 kb on + strandat 3736.536 kb on - strandat 3736.640 kb on + strand, within Pf6N2E2_3232at 3736.641 kb on - strand, within Pf6N2E2_3232at 3736.707 kb on - strand, within Pf6N2E2_3232at 3736.707 kb on - strand, within Pf6N2E2_3232at 3736.811 kb on + strand, within Pf6N2E2_3232at 3736.811 kb on + strand, within Pf6N2E2_3232at 3736.812 kb on - strand, within Pf6N2E2_3232at 3736.862 kb on + strand, within Pf6N2E2_3232at 3736.862 kb on + strand, within Pf6N2E2_3232at 3736.997 kb on + strand, within Pf6N2E2_3232at 3736.997 kb on + strand, within Pf6N2E2_3232at 3736.998 kb on - strand, within Pf6N2E2_3232at 3736.998 kb on - strand, within Pf6N2E2_3232at 3737.045 kb on + strand, within Pf6N2E2_3232at 3737.045 kb on + strand, within Pf6N2E2_3232at 3737.046 kb on - strand, within Pf6N2E2_3232at 3737.046 kb on - strand, within Pf6N2E2_3232at 3737.046 kb on - strand, within Pf6N2E2_3232at 3737.046 kb on - strand, within Pf6N2E2_3232at 3737.157 kb on - strand, within Pf6N2E2_3232at 3737.357 kb on + strand, within Pf6N2E2_3232at 3737.357 kb on + strand, within Pf6N2E2_3232at 3737.357 kb on + strand, within Pf6N2E2_3232at 3737.357 kb on + strand, within Pf6N2E2_3232at 3737.358 kb on - strand, within Pf6N2E2_3232at 3737.450 kb on - strandat 3737.450 kb on - strandat 3737.450 kb on - strandat 3737.592 kb on + strandat 3737.593 kb on - strandat 3737.593 kb on - strandat 3737.593 kb on - strandat 3737.634 kb on + strandat 3737.634 kb on + strandat 3737.634 kb on + strandat 3737.635 kb on - strandat 3737.635 kb on - strandat 3737.733 kb on + strandat 3737.815 kb on + strand, within Pf6N2E2_3233at 3737.816 kb on - strand, within Pf6N2E2_3233at 3737.868 kb on + strand, within Pf6N2E2_3233at 3737.869 kb on - strand, within Pf6N2E2_3233at 3737.964 kb on + strand, within Pf6N2E2_3233at 3737.964 kb on + strand, within Pf6N2E2_3233at 3737.964 kb on + strand, within Pf6N2E2_3233at 3737.964 kb on + strand, within Pf6N2E2_3233at 3738.210 kb on + strand, within Pf6N2E2_3233at 3738.210 kb on + strand, within Pf6N2E2_3233at 3738.211 kb on - strand, within Pf6N2E2_3233at 3738.211 kb on - strand, within Pf6N2E2_3233at 3738.318 kb on + strand, within Pf6N2E2_3233at 3738.318 kb on + strand, within Pf6N2E2_3233at 3738.318 kb on + strand, within Pf6N2E2_3233at 3738.318 kb on + strand, within Pf6N2E2_3233at 3738.318 kb on + strand, within Pf6N2E2_3233at 3738.318 kb on + strand, within Pf6N2E2_3233at 3738.319 kb on - strand, within Pf6N2E2_3233at 3738.319 kb on - strand, within Pf6N2E2_3233at 3738.321 kb on + strand, within Pf6N2E2_3233at 3738.321 kb on + strand, within Pf6N2E2_3233at 3738.322 kb on - strand, within Pf6N2E2_3233at 3738.504 kb on + strand, within Pf6N2E2_3233at 3738.505 kb on - strand, within Pf6N2E2_3233at 3738.505 kb on - strand, within Pf6N2E2_3233

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Per-strain Table

Position Strand Gene LocusTag Fraction antimonate 0.005 M
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3,735,571 + -0.2
3,735,583 + +0.2
3,735,584 - -0.7
3,735,726 + Pf6N2E2_3231 0.13 +0.4
3,735,727 - Pf6N2E2_3231 0.14 -0.1
3,735,727 - Pf6N2E2_3231 0.14 +0.9
3,735,727 - Pf6N2E2_3231 0.14 +0.9
3,736,200 + Pf6N2E2_3231 0.66 +0.2
3,736,200 + Pf6N2E2_3231 0.66 +0.5
3,736,200 + Pf6N2E2_3231 0.66 +0.9
3,736,200 + Pf6N2E2_3231 0.66 -0.5
3,736,201 - Pf6N2E2_3231 0.66 +0.2
3,736,201 - Pf6N2E2_3231 0.66 +0.0
3,736,201 - Pf6N2E2_3231 0.66 -0.2
3,736,201 - Pf6N2E2_3231 0.66 -0.5
3,736,222 - Pf6N2E2_3231 0.68 -0.1
3,736,222 - Pf6N2E2_3231 0.68 +0.5
3,736,251 + Pf6N2E2_3231 0.72 +0.1
3,736,252 - Pf6N2E2_3231 0.72 -0.2
3,736,457 - -1.1
3,736,535 + -0.1
3,736,536 - +0.4
3,736,640 + Pf6N2E2_3232 0.13 +0.1
3,736,641 - Pf6N2E2_3232 0.13 +0.8
3,736,707 - Pf6N2E2_3232 0.19 -0.3
3,736,707 - Pf6N2E2_3232 0.19 -0.5
3,736,811 + Pf6N2E2_3232 0.29 +1.0
3,736,811 + Pf6N2E2_3232 0.29 +0.0
3,736,812 - Pf6N2E2_3232 0.29 +0.7
3,736,862 + Pf6N2E2_3232 0.34 +0.6
3,736,862 + Pf6N2E2_3232 0.34 +0.4
3,736,997 + Pf6N2E2_3232 0.47 +0.6
3,736,997 + Pf6N2E2_3232 0.47 -1.7
3,736,998 - Pf6N2E2_3232 0.47 +1.5
3,736,998 - Pf6N2E2_3232 0.47 +0.3
3,737,045 + Pf6N2E2_3232 0.52 -0.7
3,737,045 + Pf6N2E2_3232 0.52 +0.3
3,737,046 - Pf6N2E2_3232 0.52 +1.5
3,737,046 - Pf6N2E2_3232 0.52 -0.4
3,737,046 - Pf6N2E2_3232 0.52 +0.1
3,737,046 - Pf6N2E2_3232 0.52 +0.2
3,737,157 - Pf6N2E2_3232 0.63 +0.3
3,737,357 + Pf6N2E2_3232 0.82 -1.2
3,737,357 + Pf6N2E2_3232 0.82 -0.9
3,737,357 + Pf6N2E2_3232 0.82 -1.2
3,737,357 + Pf6N2E2_3232 0.82 -1.3
3,737,358 - Pf6N2E2_3232 0.82 -0.4
3,737,450 - -0.1
3,737,450 - +1.4
3,737,450 - +1.7
3,737,592 + -0.3
3,737,593 - -0.1
3,737,593 - -1.1
3,737,593 - -0.2
3,737,634 + -0.5
3,737,634 + +2.2
3,737,634 + +0.7
3,737,635 - +1.2
3,737,635 - +1.4
3,737,733 + +1.2
3,737,815 + Pf6N2E2_3233 0.15 +0.9
3,737,816 - Pf6N2E2_3233 0.15 -0.3
3,737,868 + Pf6N2E2_3233 0.18 -0.6
3,737,869 - Pf6N2E2_3233 0.18 +1.0
3,737,964 + Pf6N2E2_3233 0.24 -0.6
3,737,964 + Pf6N2E2_3233 0.24 +0.9
3,737,964 + Pf6N2E2_3233 0.24 +0.3
3,737,964 + Pf6N2E2_3233 0.24 +1.5
3,738,210 + Pf6N2E2_3233 0.39 -0.7
3,738,210 + Pf6N2E2_3233 0.39 +0.9
3,738,211 - Pf6N2E2_3233 0.39 +0.3
3,738,211 - Pf6N2E2_3233 0.39 +1.5
3,738,318 + Pf6N2E2_3233 0.46 -0.1
3,738,318 + Pf6N2E2_3233 0.46 +0.1
3,738,318 + Pf6N2E2_3233 0.46 +0.5
3,738,318 + Pf6N2E2_3233 0.46 -1.3
3,738,318 + Pf6N2E2_3233 0.46 +0.4
3,738,318 + Pf6N2E2_3233 0.46 +0.5
3,738,319 - Pf6N2E2_3233 0.46 -0.5
3,738,319 - Pf6N2E2_3233 0.46 -0.5
3,738,321 + Pf6N2E2_3233 0.46 -1.6
3,738,321 + Pf6N2E2_3233 0.46 +0.3
3,738,322 - Pf6N2E2_3233 0.46 -0.5
3,738,504 + Pf6N2E2_3233 0.57 -1.0
3,738,505 - Pf6N2E2_3233 0.57 -0.1
3,738,505 - Pf6N2E2_3233 0.57 -1.1

Or see this region's nucleotide sequence