Experiment: antimonate 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2390 and Pf6N2E2_2391 are separated by 19 nucleotides Pf6N2E2_2391 and Pf6N2E2_2392 are separated by 132 nucleotides Pf6N2E2_2392 and Pf6N2E2_2393 are separated by 103 nucleotides
Pf6N2E2_2390 - FIG00959101: hypothetical protein, at 2,829,557 to 2,829,763
_2390
Pf6N2E2_2391 - FIG137360: hypothetical protein, at 2,829,783 to 2,830,601
_2391
Pf6N2E2_2392 - ThiJ/PfpI family protein, at 2,830,734 to 2,831,579
_2392
Pf6N2E2_2393 - Transcriptional regulator, LysR family, at 2,831,683 to 2,832,579
_2393
Position (kb)
2830
2831
2832 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2829.761 kb on + strand at 2829.761 kb on + strand at 2829.762 kb on - strand at 2829.762 kb on - strand at 2829.824 kb on + strand at 2829.873 kb on - strand, within Pf6N2E2_2391 at 2829.889 kb on + strand, within Pf6N2E2_2391 at 2829.897 kb on + strand, within Pf6N2E2_2391 at 2829.897 kb on + strand, within Pf6N2E2_2391 at 2829.931 kb on + strand, within Pf6N2E2_2391 at 2829.932 kb on - strand, within Pf6N2E2_2391 at 2829.932 kb on - strand, within Pf6N2E2_2391 at 2829.932 kb on - strand, within Pf6N2E2_2391 at 2829.944 kb on + strand, within Pf6N2E2_2391 at 2829.945 kb on - strand, within Pf6N2E2_2391 at 2829.977 kb on + strand, within Pf6N2E2_2391 at 2829.978 kb on - strand, within Pf6N2E2_2391 at 2830.101 kb on + strand, within Pf6N2E2_2391 at 2830.143 kb on + strand, within Pf6N2E2_2391 at 2830.143 kb on + strand, within Pf6N2E2_2391 at 2830.143 kb on + strand, within Pf6N2E2_2391 at 2830.143 kb on + strand, within Pf6N2E2_2391 at 2830.143 kb on + strand, within Pf6N2E2_2391 at 2830.143 kb on + strand, within Pf6N2E2_2391 at 2830.144 kb on - strand, within Pf6N2E2_2391 at 2830.144 kb on - strand, within Pf6N2E2_2391 at 2830.144 kb on - strand, within Pf6N2E2_2391 at 2830.144 kb on - strand at 2830.206 kb on + strand, within Pf6N2E2_2391 at 2830.206 kb on + strand, within Pf6N2E2_2391 at 2830.209 kb on + strand, within Pf6N2E2_2391 at 2830.210 kb on - strand, within Pf6N2E2_2391 at 2830.210 kb on - strand, within Pf6N2E2_2391 at 2830.210 kb on - strand, within Pf6N2E2_2391 at 2830.231 kb on + strand, within Pf6N2E2_2391 at 2830.232 kb on - strand, within Pf6N2E2_2391 at 2830.232 kb on - strand, within Pf6N2E2_2391 at 2830.253 kb on + strand, within Pf6N2E2_2391 at 2830.272 kb on + strand, within Pf6N2E2_2391 at 2830.272 kb on + strand, within Pf6N2E2_2391 at 2830.273 kb on - strand, within Pf6N2E2_2391 at 2830.308 kb on + strand, within Pf6N2E2_2391 at 2830.308 kb on + strand, within Pf6N2E2_2391 at 2830.309 kb on - strand, within Pf6N2E2_2391 at 2830.455 kb on + strand, within Pf6N2E2_2391 at 2830.455 kb on + strand, within Pf6N2E2_2391 at 2830.455 kb on + strand, within Pf6N2E2_2391 at 2830.455 kb on + strand, within Pf6N2E2_2391 at 2830.455 kb on + strand, within Pf6N2E2_2391 at 2830.456 kb on - strand, within Pf6N2E2_2391 at 2830.512 kb on - strand, within Pf6N2E2_2391 at 2830.512 kb on - strand, within Pf6N2E2_2391 at 2830.512 kb on - strand, within Pf6N2E2_2391 at 2830.599 kb on + strand at 2830.736 kb on - strand at 2830.975 kb on + strand, within Pf6N2E2_2392 at 2830.975 kb on + strand, within Pf6N2E2_2392 at 2830.975 kb on + strand, within Pf6N2E2_2392 at 2830.975 kb on + strand, within Pf6N2E2_2392 at 2830.975 kb on + strand, within Pf6N2E2_2392 at 2830.976 kb on - strand, within Pf6N2E2_2392 at 2830.976 kb on - strand, within Pf6N2E2_2392 at 2830.976 kb on - strand, within Pf6N2E2_2392 at 2830.976 kb on - strand, within Pf6N2E2_2392 at 2831.182 kb on + strand, within Pf6N2E2_2392 at 2831.182 kb on + strand, within Pf6N2E2_2392 at 2831.182 kb on + strand, within Pf6N2E2_2392 at 2831.182 kb on + strand, within Pf6N2E2_2392 at 2831.182 kb on + strand, within Pf6N2E2_2392 at 2831.182 kb on + strand, within Pf6N2E2_2392 at 2831.183 kb on - strand, within Pf6N2E2_2392 at 2831.183 kb on - strand, within Pf6N2E2_2392 at 2831.262 kb on - strand, within Pf6N2E2_2392 at 2831.287 kb on + strand, within Pf6N2E2_2392 at 2831.320 kb on + strand, within Pf6N2E2_2392 at 2831.320 kb on + strand, within Pf6N2E2_2392 at 2831.320 kb on + strand, within Pf6N2E2_2392 at 2831.320 kb on + strand, within Pf6N2E2_2392 at 2831.321 kb on - strand, within Pf6N2E2_2392 at 2831.437 kb on + strand, within Pf6N2E2_2392 at 2831.619 kb on + strand at 2831.619 kb on + strand at 2831.702 kb on - strand at 2831.888 kb on - strand, within Pf6N2E2_2393 at 2831.888 kb on - strand, within Pf6N2E2_2393 at 2831.998 kb on + strand, within Pf6N2E2_2393 at 2831.998 kb on + strand, within Pf6N2E2_2393 at 2831.998 kb on + strand, within Pf6N2E2_2393 at 2831.998 kb on + strand, within Pf6N2E2_2393 at 2831.998 kb on + strand, within Pf6N2E2_2393 at 2831.999 kb on - strand, within Pf6N2E2_2393 at 2831.999 kb on - strand, within Pf6N2E2_2393 at 2831.999 kb on - strand, within Pf6N2E2_2393 at 2831.999 kb on - strand, within Pf6N2E2_2393 at 2831.999 kb on - strand, within Pf6N2E2_2393 at 2832.073 kb on - strand, within Pf6N2E2_2393 at 2832.371 kb on + strand, within Pf6N2E2_2393 at 2832.371 kb on + strand, within Pf6N2E2_2393 at 2832.371 kb on + strand, within Pf6N2E2_2393 at 2832.371 kb on + strand, within Pf6N2E2_2393 at 2832.371 kb on + strand, within Pf6N2E2_2393 at 2832.371 kb on + strand, within Pf6N2E2_2393 at 2832.371 kb on + strand, within Pf6N2E2_2393 at 2832.372 kb on - strand, within Pf6N2E2_2393 at 2832.372 kb on - strand, within Pf6N2E2_2393 at 2832.372 kb on - strand, within Pf6N2E2_2393 at 2832.372 kb on - strand, within Pf6N2E2_2393 at 2832.372 kb on - strand, within Pf6N2E2_2393 at 2832.372 kb on - strand, within Pf6N2E2_2393 at 2832.372 kb on - strand, within Pf6N2E2_2393 at 2832.372 kb on - strand, within Pf6N2E2_2393 at 2832.372 kb on - strand, within Pf6N2E2_2393 at 2832.421 kb on + strand, within Pf6N2E2_2393 at 2832.421 kb on + strand, within Pf6N2E2_2393 at 2832.421 kb on + strand, within Pf6N2E2_2393 at 2832.421 kb on + strand, within Pf6N2E2_2393 at 2832.421 kb on + strand, within Pf6N2E2_2393 at 2832.422 kb on - strand, within Pf6N2E2_2393 at 2832.422 kb on - strand, within Pf6N2E2_2393 at 2832.422 kb on - strand, within Pf6N2E2_2393
Per-strain Table
Position Strand Gene LocusTag Fraction antimonate 0.005 M remove 2,829,761 + -0.8 2,829,761 + -1.7 2,829,762 - +0.2 2,829,762 - -0.1 2,829,824 + +1.3 2,829,873 - Pf6N2E2_2391 0.11 -0.9 2,829,889 + Pf6N2E2_2391 0.13 -0.5 2,829,897 + Pf6N2E2_2391 0.14 -0.8 2,829,897 + Pf6N2E2_2391 0.14 -1.1 2,829,931 + Pf6N2E2_2391 0.18 +0.3 2,829,932 - Pf6N2E2_2391 0.18 -0.2 2,829,932 - Pf6N2E2_2391 0.18 -0.0 2,829,932 - Pf6N2E2_2391 0.18 +0.3 2,829,944 + Pf6N2E2_2391 0.20 +0.5 2,829,945 - Pf6N2E2_2391 0.20 +0.6 2,829,977 + Pf6N2E2_2391 0.24 +0.2 2,829,978 - Pf6N2E2_2391 0.24 -2.8 2,830,101 + Pf6N2E2_2391 0.39 -0.6 2,830,143 + Pf6N2E2_2391 0.44 +0.5 2,830,143 + Pf6N2E2_2391 0.44 -0.3 2,830,143 + Pf6N2E2_2391 0.44 -1.0 2,830,143 + Pf6N2E2_2391 0.44 +0.2 2,830,143 + Pf6N2E2_2391 0.44 -0.1 2,830,143 + Pf6N2E2_2391 0.44 +0.3 2,830,144 - Pf6N2E2_2391 0.44 -2.4 2,830,144 - Pf6N2E2_2391 0.44 +1.0 2,830,144 - Pf6N2E2_2391 0.44 -0.2 2,830,144 - +1.8 2,830,206 + Pf6N2E2_2391 0.52 -0.1 2,830,206 + Pf6N2E2_2391 0.52 +0.1 2,830,209 + Pf6N2E2_2391 0.52 +0.3 2,830,210 - Pf6N2E2_2391 0.52 +0.2 2,830,210 - Pf6N2E2_2391 0.52 +0.6 2,830,210 - Pf6N2E2_2391 0.52 -0.0 2,830,231 + Pf6N2E2_2391 0.55 +0.9 2,830,232 - Pf6N2E2_2391 0.55 +1.4 2,830,232 - Pf6N2E2_2391 0.55 -1.6 2,830,253 + Pf6N2E2_2391 0.57 +2.2 2,830,272 + Pf6N2E2_2391 0.60 +1.8 2,830,272 + Pf6N2E2_2391 0.60 -0.6 2,830,273 - Pf6N2E2_2391 0.60 +2.2 2,830,308 + Pf6N2E2_2391 0.64 -0.1 2,830,308 + Pf6N2E2_2391 0.64 +0.6 2,830,309 - Pf6N2E2_2391 0.64 +0.2 2,830,455 + Pf6N2E2_2391 0.82 +0.7 2,830,455 + Pf6N2E2_2391 0.82 +0.3 2,830,455 + Pf6N2E2_2391 0.82 -0.5 2,830,455 + Pf6N2E2_2391 0.82 -0.4 2,830,455 + Pf6N2E2_2391 0.82 +0.2 2,830,456 - Pf6N2E2_2391 0.82 -0.2 2,830,512 - Pf6N2E2_2391 0.89 +0.5 2,830,512 - Pf6N2E2_2391 0.89 +0.5 2,830,512 - Pf6N2E2_2391 0.89 +0.4 2,830,599 + -1.4 2,830,736 - +1.6 2,830,975 + Pf6N2E2_2392 0.28 -0.7 2,830,975 + Pf6N2E2_2392 0.28 +0.8 2,830,975 + Pf6N2E2_2392 0.28 +1.4 2,830,975 + Pf6N2E2_2392 0.28 +1.8 2,830,975 + Pf6N2E2_2392 0.28 +0.1 2,830,976 - Pf6N2E2_2392 0.29 +2.3 2,830,976 - Pf6N2E2_2392 0.29 +0.4 2,830,976 - Pf6N2E2_2392 0.29 -0.3 2,830,976 - Pf6N2E2_2392 0.29 -0.8 2,831,182 + Pf6N2E2_2392 0.53 +0.3 2,831,182 + Pf6N2E2_2392 0.53 -1.1 2,831,182 + Pf6N2E2_2392 0.53 +0.1 2,831,182 + Pf6N2E2_2392 0.53 -0.5 2,831,182 + Pf6N2E2_2392 0.53 -0.6 2,831,182 + Pf6N2E2_2392 0.53 +1.8 2,831,183 - Pf6N2E2_2392 0.53 -0.2 2,831,183 - Pf6N2E2_2392 0.53 -2.9 2,831,262 - Pf6N2E2_2392 0.62 -0.9 2,831,287 + Pf6N2E2_2392 0.65 -0.5 2,831,320 + Pf6N2E2_2392 0.69 -0.7 2,831,320 + Pf6N2E2_2392 0.69 -1.2 2,831,320 + Pf6N2E2_2392 0.69 +0.1 2,831,320 + Pf6N2E2_2392 0.69 -0.9 2,831,321 - Pf6N2E2_2392 0.69 -1.0 2,831,437 + Pf6N2E2_2392 0.83 -0.8 2,831,619 + +0.5 2,831,619 + -0.7 2,831,702 - -0.9 2,831,888 - Pf6N2E2_2393 0.23 -0.7 2,831,888 - Pf6N2E2_2393 0.23 -0.6 2,831,998 + Pf6N2E2_2393 0.35 +0.5 2,831,998 + Pf6N2E2_2393 0.35 +0.6 2,831,998 + Pf6N2E2_2393 0.35 +0.5 2,831,998 + Pf6N2E2_2393 0.35 +0.2 2,831,998 + Pf6N2E2_2393 0.35 +1.9 2,831,999 - Pf6N2E2_2393 0.35 -0.3 2,831,999 - Pf6N2E2_2393 0.35 -0.2 2,831,999 - Pf6N2E2_2393 0.35 -1.2 2,831,999 - Pf6N2E2_2393 0.35 +1.2 2,831,999 - Pf6N2E2_2393 0.35 -0.0 2,832,073 - Pf6N2E2_2393 0.43 +0.8 2,832,371 + Pf6N2E2_2393 0.77 +1.1 2,832,371 + Pf6N2E2_2393 0.77 +0.4 2,832,371 + Pf6N2E2_2393 0.77 -0.1 2,832,371 + Pf6N2E2_2393 0.77 -1.0 2,832,371 + Pf6N2E2_2393 0.77 +0.3 2,832,371 + Pf6N2E2_2393 0.77 +0.4 2,832,371 + Pf6N2E2_2393 0.77 -0.4 2,832,372 - Pf6N2E2_2393 0.77 -0.6 2,832,372 - Pf6N2E2_2393 0.77 -0.4 2,832,372 - Pf6N2E2_2393 0.77 +1.7 2,832,372 - Pf6N2E2_2393 0.77 +1.2 2,832,372 - Pf6N2E2_2393 0.77 -0.2 2,832,372 - Pf6N2E2_2393 0.77 +0.3 2,832,372 - Pf6N2E2_2393 0.77 +1.8 2,832,372 - Pf6N2E2_2393 0.77 -0.2 2,832,372 - Pf6N2E2_2393 0.77 -0.2 2,832,421 + Pf6N2E2_2393 0.82 +0.4 2,832,421 + Pf6N2E2_2393 0.82 +0.5 2,832,421 + Pf6N2E2_2393 0.82 -2.1 2,832,421 + Pf6N2E2_2393 0.82 +1.2 2,832,421 + Pf6N2E2_2393 0.82 +0.0 2,832,422 - Pf6N2E2_2393 0.82 -0.8 2,832,422 - Pf6N2E2_2393 0.82 +0.9 2,832,422 - Pf6N2E2_2393 0.82 -0.5
Or see this region's nucleotide sequence