Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1530

Experiment: antimonate 0.005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1528 and Pf6N2E2_1529 are separated by 42 nucleotidesPf6N2E2_1529 and Pf6N2E2_1530 are separated by 168 nucleotidesPf6N2E2_1530 and Pf6N2E2_1531 are separated by 323 nucleotides Pf6N2E2_1528 - Cation transporting ATPase, N-terminal:Haloacid dehalogenase-like hydrolase:Cation transporting ATPase, C-terminal:E1-E2 ATPase- associated region, at 1,786,334 to 1,789,081 _1528 Pf6N2E2_1529 - hypothetical protein, at 1,789,124 to 1,789,609 _1529 Pf6N2E2_1530 - Flagellar regulatory protein FleQ, at 1,789,778 to 1,791,007 _1530 Pf6N2E2_1531 - FIG146518: Zn-dependent hydrolases, including glyoxylases, at 1,791,331 to 1,792,209 _1531 Position (kb) 1789 1790 1791 1792Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1788.793 kb on - strand, within Pf6N2E2_1528at 1788.793 kb on - strand, within Pf6N2E2_1528at 1789.523 kb on + strand, within Pf6N2E2_1529at 1789.523 kb on + strand, within Pf6N2E2_1529at 1789.523 kb on + strand, within Pf6N2E2_1529at 1789.523 kb on + strand, within Pf6N2E2_1529at 1789.538 kb on + strand, within Pf6N2E2_1529at 1789.538 kb on + strand, within Pf6N2E2_1529at 1789.538 kb on + strand, within Pf6N2E2_1529at 1789.538 kb on + strand, within Pf6N2E2_1529at 1789.630 kb on + strandat 1789.630 kb on + strandat 1789.660 kb on - strandat 1789.809 kb on + strandat 1789.810 kb on - strandat 1789.812 kb on - strandat 1789.897 kb on + strandat 1790.162 kb on + strand, within Pf6N2E2_1530at 1790.194 kb on - strand, within Pf6N2E2_1530at 1790.194 kb on - strand, within Pf6N2E2_1530at 1790.286 kb on - strand, within Pf6N2E2_1530at 1790.286 kb on - strand, within Pf6N2E2_1530at 1790.304 kb on + strand, within Pf6N2E2_1530at 1790.364 kb on - strand, within Pf6N2E2_1530at 1790.364 kb on - strand, within Pf6N2E2_1530at 1790.645 kb on - strand, within Pf6N2E2_1530at 1790.645 kb on - strand, within Pf6N2E2_1530at 1790.645 kb on - strand, within Pf6N2E2_1530at 1790.677 kb on + strand, within Pf6N2E2_1530at 1790.678 kb on - strand, within Pf6N2E2_1530at 1790.678 kb on - strand, within Pf6N2E2_1530at 1790.678 kb on - strand, within Pf6N2E2_1530at 1790.725 kb on - strand, within Pf6N2E2_1530at 1790.725 kb on - strand, within Pf6N2E2_1530at 1790.914 kb on + strandat 1790.915 kb on - strandat 1790.915 kb on - strandat 1790.958 kb on + strandat 1790.958 kb on + strandat 1790.959 kb on - strandat 1790.965 kb on + strandat 1790.985 kb on + strandat 1791.144 kb on - strandat 1791.172 kb on - strandat 1791.277 kb on + strandat 1791.339 kb on - strandat 1791.466 kb on - strand, within Pf6N2E2_1531at 1791.632 kb on + strand, within Pf6N2E2_1531at 1791.633 kb on - strand, within Pf6N2E2_1531at 1791.633 kb on - strand, within Pf6N2E2_1531at 1791.633 kb on - strand, within Pf6N2E2_1531at 1791.790 kb on + strand, within Pf6N2E2_1531at 1791.790 kb on + strand, within Pf6N2E2_1531at 1791.790 kb on + strand, within Pf6N2E2_1531at 1791.790 kb on + strand, within Pf6N2E2_1531at 1791.790 kb on + strand, within Pf6N2E2_1531at 1791.790 kb on + strand, within Pf6N2E2_1531at 1791.790 kb on + strand, within Pf6N2E2_1531at 1791.791 kb on - strand, within Pf6N2E2_1531at 1791.791 kb on - strand, within Pf6N2E2_1531at 1791.791 kb on - strand, within Pf6N2E2_1531at 1791.791 kb on - strand, within Pf6N2E2_1531at 1791.791 kb on - strand, within Pf6N2E2_1531at 1791.791 kb on - strand, within Pf6N2E2_1531at 1791.791 kb on - strand, within Pf6N2E2_1531at 1791.791 kb on - strand, within Pf6N2E2_1531at 1791.791 kb on - strand, within Pf6N2E2_1531at 1791.791 kb on - strand, within Pf6N2E2_1531at 1791.791 kb on - strand, within Pf6N2E2_1531at 1791.791 kb on - strand, within Pf6N2E2_1531at 1791.791 kb on - strand, within Pf6N2E2_1531at 1791.791 kb on - strand, within Pf6N2E2_1531at 1791.791 kb on - strand, within Pf6N2E2_1531at 1791.895 kb on - strand, within Pf6N2E2_1531at 1791.895 kb on - strand, within Pf6N2E2_1531at 1791.895 kb on - strand, within Pf6N2E2_1531at 1791.950 kb on - strand, within Pf6N2E2_1531at 1791.950 kb on - strand, within Pf6N2E2_1531at 1791.950 kb on - strand, within Pf6N2E2_1531at 1791.950 kb on - strand, within Pf6N2E2_1531

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Per-strain Table

Position Strand Gene LocusTag Fraction antimonate 0.005 M
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1,788,793 - Pf6N2E2_1528 0.89 +0.3
1,788,793 - Pf6N2E2_1528 0.89 -0.1
1,789,523 + Pf6N2E2_1529 0.82 -0.8
1,789,523 + Pf6N2E2_1529 0.82 -0.4
1,789,523 + Pf6N2E2_1529 0.82 +1.8
1,789,523 + Pf6N2E2_1529 0.82 -0.3
1,789,538 + Pf6N2E2_1529 0.85 +1.3
1,789,538 + Pf6N2E2_1529 0.85 -0.1
1,789,538 + Pf6N2E2_1529 0.85 +0.4
1,789,538 + Pf6N2E2_1529 0.85 +0.6
1,789,630 + +1.5
1,789,630 + +2.0
1,789,660 - -0.1
1,789,809 + +1.9
1,789,810 - +1.6
1,789,812 - +2.3
1,789,897 + +1.9
1,790,162 + Pf6N2E2_1530 0.31 -1.3
1,790,194 - Pf6N2E2_1530 0.34 +1.8
1,790,194 - Pf6N2E2_1530 0.34 +1.0
1,790,286 - Pf6N2E2_1530 0.41 +0.5
1,790,286 - Pf6N2E2_1530 0.41 +1.2
1,790,304 + Pf6N2E2_1530 0.43 +0.5
1,790,364 - Pf6N2E2_1530 0.48 +1.2
1,790,364 - Pf6N2E2_1530 0.48 +0.5
1,790,645 - Pf6N2E2_1530 0.70 +2.1
1,790,645 - Pf6N2E2_1530 0.70 +2.0
1,790,645 - Pf6N2E2_1530 0.70 +0.5
1,790,677 + Pf6N2E2_1530 0.73 +0.7
1,790,678 - Pf6N2E2_1530 0.73 -0.5
1,790,678 - Pf6N2E2_1530 0.73 +1.8
1,790,678 - Pf6N2E2_1530 0.73 +1.5
1,790,725 - Pf6N2E2_1530 0.77 +1.2
1,790,725 - Pf6N2E2_1530 0.77 +1.3
1,790,914 + -2.1
1,790,915 - -1.0
1,790,915 - +0.6
1,790,958 + -1.7
1,790,958 + -1.5
1,790,959 - +2.1
1,790,965 + -1.0
1,790,985 + -2.2
1,791,144 - +1.6
1,791,172 - +1.2
1,791,277 + -1.2
1,791,339 - +0.9
1,791,466 - Pf6N2E2_1531 0.15 +2.5
1,791,632 + Pf6N2E2_1531 0.34 +0.5
1,791,633 - Pf6N2E2_1531 0.34 +1.5
1,791,633 - Pf6N2E2_1531 0.34 +0.7
1,791,633 - Pf6N2E2_1531 0.34 +0.5
1,791,790 + Pf6N2E2_1531 0.52 -0.3
1,791,790 + Pf6N2E2_1531 0.52 -3.0
1,791,790 + Pf6N2E2_1531 0.52 -1.5
1,791,790 + Pf6N2E2_1531 0.52 +0.1
1,791,790 + Pf6N2E2_1531 0.52 +2.5
1,791,790 + Pf6N2E2_1531 0.52 -1.3
1,791,790 + Pf6N2E2_1531 0.52 -1.8
1,791,791 - Pf6N2E2_1531 0.52 +1.1
1,791,791 - Pf6N2E2_1531 0.52 +1.5
1,791,791 - Pf6N2E2_1531 0.52 +0.9
1,791,791 - Pf6N2E2_1531 0.52 +1.7
1,791,791 - Pf6N2E2_1531 0.52 +1.3
1,791,791 - Pf6N2E2_1531 0.52 +0.7
1,791,791 - Pf6N2E2_1531 0.52 +1.7
1,791,791 - Pf6N2E2_1531 0.52 +1.6
1,791,791 - Pf6N2E2_1531 0.52 +1.8
1,791,791 - Pf6N2E2_1531 0.52 +1.6
1,791,791 - Pf6N2E2_1531 0.52 +0.1
1,791,791 - Pf6N2E2_1531 0.52 +0.5
1,791,791 - Pf6N2E2_1531 0.52 +0.0
1,791,791 - Pf6N2E2_1531 0.52 -0.5
1,791,791 - Pf6N2E2_1531 0.52 +1.8
1,791,895 - Pf6N2E2_1531 0.64 +1.8
1,791,895 - Pf6N2E2_1531 0.64 +0.9
1,791,895 - Pf6N2E2_1531 0.64 +0.9
1,791,950 - Pf6N2E2_1531 0.70 +1.2
1,791,950 - Pf6N2E2_1531 0.70 +1.8
1,791,950 - Pf6N2E2_1531 0.70 +1.5
1,791,950 - Pf6N2E2_1531 0.70 +1.5

Or see this region's nucleotide sequence