Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1474

Experiment: antimonate 0.005 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1472 and Pf6N2E2_1473 are separated by 280 nucleotidesPf6N2E2_1473 and Pf6N2E2_1474 are separated by 23 nucleotidesPf6N2E2_1474 and Pf6N2E2_1475 are separated by 326 nucleotides Pf6N2E2_1472 - Cytochrome b561, at 1,723,084 to 1,723,635 _1472 Pf6N2E2_1473 - hypothetical protein, at 1,723,916 to 1,724,077 _1473 Pf6N2E2_1474 - SAM-dependent methyltransferases, at 1,724,101 to 1,724,697 _1474 Pf6N2E2_1475 - Arsenic resistance protein ArsH, at 1,725,024 to 1,725,758 _1475 Position (kb) 1724 1725Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1723.123 kb on - strandat 1723.140 kb on - strand, within Pf6N2E2_1472at 1723.201 kb on + strand, within Pf6N2E2_1472at 1723.202 kb on - strand, within Pf6N2E2_1472at 1723.214 kb on + strandat 1723.215 kb on - strand, within Pf6N2E2_1472at 1723.215 kb on - strand, within Pf6N2E2_1472at 1723.346 kb on + strand, within Pf6N2E2_1472at 1723.550 kb on + strand, within Pf6N2E2_1472at 1723.550 kb on + strand, within Pf6N2E2_1472at 1723.550 kb on + strand, within Pf6N2E2_1472at 1723.550 kb on + strand, within Pf6N2E2_1472at 1723.551 kb on - strand, within Pf6N2E2_1472at 1723.768 kb on - strandat 1723.806 kb on - strandat 1723.881 kb on - strandat 1724.003 kb on + strand, within Pf6N2E2_1473at 1724.003 kb on + strand, within Pf6N2E2_1473at 1724.113 kb on - strandat 1724.328 kb on - strand, within Pf6N2E2_1474at 1724.328 kb on - strand, within Pf6N2E2_1474at 1724.328 kb on - strand, within Pf6N2E2_1474at 1724.328 kb on - strand, within Pf6N2E2_1474at 1724.334 kb on - strand, within Pf6N2E2_1474at 1724.334 kb on - strand, within Pf6N2E2_1474at 1724.372 kb on - strand, within Pf6N2E2_1474at 1724.395 kb on + strand, within Pf6N2E2_1474at 1724.396 kb on - strand, within Pf6N2E2_1474at 1724.396 kb on - strand, within Pf6N2E2_1474at 1724.434 kb on + strand, within Pf6N2E2_1474at 1724.459 kb on + strand, within Pf6N2E2_1474at 1724.459 kb on + strand, within Pf6N2E2_1474at 1724.460 kb on - strand, within Pf6N2E2_1474at 1724.460 kb on - strand, within Pf6N2E2_1474at 1724.460 kb on - strand, within Pf6N2E2_1474at 1724.460 kb on - strand, within Pf6N2E2_1474at 1724.560 kb on - strand, within Pf6N2E2_1474at 1724.560 kb on - strand, within Pf6N2E2_1474at 1724.760 kb on - strandat 1724.800 kb on - strandat 1724.848 kb on + strandat 1725.022 kb on + strandat 1725.023 kb on - strandat 1725.023 kb on - strandat 1725.023 kb on - strandat 1725.088 kb on + strandat 1725.089 kb on - strandat 1725.131 kb on + strand, within Pf6N2E2_1475at 1725.131 kb on + strand, within Pf6N2E2_1475at 1725.132 kb on - strand, within Pf6N2E2_1475at 1725.143 kb on - strand, within Pf6N2E2_1475at 1725.148 kb on + strand, within Pf6N2E2_1475at 1725.148 kb on + strand, within Pf6N2E2_1475at 1725.149 kb on - strand, within Pf6N2E2_1475at 1725.153 kb on + strand, within Pf6N2E2_1475at 1725.153 kb on + strand, within Pf6N2E2_1475at 1725.153 kb on + strand, within Pf6N2E2_1475at 1725.153 kb on + strand, within Pf6N2E2_1475at 1725.153 kb on + strand, within Pf6N2E2_1475at 1725.463 kb on + strand, within Pf6N2E2_1475at 1725.464 kb on - strand, within Pf6N2E2_1475at 1725.464 kb on - strand, within Pf6N2E2_1475at 1725.613 kb on - strand, within Pf6N2E2_1475at 1725.613 kb on - strand, within Pf6N2E2_1475at 1725.681 kb on + strand, within Pf6N2E2_1475at 1725.681 kb on + strand, within Pf6N2E2_1475at 1725.681 kb on + strand, within Pf6N2E2_1475at 1725.681 kb on + strand, within Pf6N2E2_1475at 1725.681 kb on + strand, within Pf6N2E2_1475at 1725.681 kb on + strand, within Pf6N2E2_1475

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction antimonate 0.005 M
remove
1,723,123 - -1.4
1,723,140 - Pf6N2E2_1472 0.10 -0.9
1,723,201 + Pf6N2E2_1472 0.21 -0.5
1,723,202 - Pf6N2E2_1472 0.21 -1.9
1,723,214 + +1.5
1,723,215 - Pf6N2E2_1472 0.24 +1.2
1,723,215 - Pf6N2E2_1472 0.24 -0.8
1,723,346 + Pf6N2E2_1472 0.47 +1.5
1,723,550 + Pf6N2E2_1472 0.84 -0.7
1,723,550 + Pf6N2E2_1472 0.84 +1.5
1,723,550 + Pf6N2E2_1472 0.84 -1.8
1,723,550 + Pf6N2E2_1472 0.84 +0.0
1,723,551 - Pf6N2E2_1472 0.85 +3.5
1,723,768 - -1.1
1,723,806 - -0.1
1,723,881 - -1.6
1,724,003 + Pf6N2E2_1473 0.54 +0.5
1,724,003 + Pf6N2E2_1473 0.54 -0.1
1,724,113 - -0.1
1,724,328 - Pf6N2E2_1474 0.38 -0.3
1,724,328 - Pf6N2E2_1474 0.38 +0.3
1,724,328 - Pf6N2E2_1474 0.38 -0.3
1,724,328 - Pf6N2E2_1474 0.38 -0.3
1,724,334 - Pf6N2E2_1474 0.39 -1.7
1,724,334 - Pf6N2E2_1474 0.39 -1.7
1,724,372 - Pf6N2E2_1474 0.45 -1.0
1,724,395 + Pf6N2E2_1474 0.49 -1.3
1,724,396 - Pf6N2E2_1474 0.49 -0.1
1,724,396 - Pf6N2E2_1474 0.49 -1.7
1,724,434 + Pf6N2E2_1474 0.56 -0.1
1,724,459 + Pf6N2E2_1474 0.60 +0.1
1,724,459 + Pf6N2E2_1474 0.60 -0.9
1,724,460 - Pf6N2E2_1474 0.60 -0.9
1,724,460 - Pf6N2E2_1474 0.60 +0.5
1,724,460 - Pf6N2E2_1474 0.60 -1.0
1,724,460 - Pf6N2E2_1474 0.60 -2.0
1,724,560 - Pf6N2E2_1474 0.77 +0.7
1,724,560 - Pf6N2E2_1474 0.77 -3.2
1,724,760 - -1.7
1,724,800 - -0.1
1,724,848 + -2.6
1,725,022 + +1.5
1,725,023 - +1.5
1,725,023 - -1.3
1,725,023 - -1.7
1,725,088 + -1.1
1,725,089 - -2.2
1,725,131 + Pf6N2E2_1475 0.15 -2.4
1,725,131 + Pf6N2E2_1475 0.15 -1.7
1,725,132 - Pf6N2E2_1475 0.15 -0.5
1,725,143 - Pf6N2E2_1475 0.16 -2.7
1,725,148 + Pf6N2E2_1475 0.17 -1.6
1,725,148 + Pf6N2E2_1475 0.17 -3.8
1,725,149 - Pf6N2E2_1475 0.17 -0.5
1,725,153 + Pf6N2E2_1475 0.18 -1.5
1,725,153 + Pf6N2E2_1475 0.18 -1.1
1,725,153 + Pf6N2E2_1475 0.18 -1.9
1,725,153 + Pf6N2E2_1475 0.18 +0.5
1,725,153 + Pf6N2E2_1475 0.18 -1.3
1,725,463 + Pf6N2E2_1475 0.60 -0.5
1,725,464 - Pf6N2E2_1475 0.60 -2.0
1,725,464 - Pf6N2E2_1475 0.60 -3.5
1,725,613 - Pf6N2E2_1475 0.80 -0.9
1,725,613 - Pf6N2E2_1475 0.80 -2.5
1,725,681 + Pf6N2E2_1475 0.89 -0.1
1,725,681 + Pf6N2E2_1475 0.89 -2.2
1,725,681 + Pf6N2E2_1475 0.89 -0.5
1,725,681 + Pf6N2E2_1475 0.89 -2.4
1,725,681 + Pf6N2E2_1475 0.89 -2.1
1,725,681 + Pf6N2E2_1475 0.89 -2.1

Or see this region's nucleotide sequence