Experiment: antimonate 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1472 and Pf6N2E2_1473 are separated by 280 nucleotides Pf6N2E2_1473 and Pf6N2E2_1474 are separated by 23 nucleotides Pf6N2E2_1474 and Pf6N2E2_1475 are separated by 326 nucleotides
Pf6N2E2_1472 - Cytochrome b561, at 1,723,084 to 1,723,635
_1472
Pf6N2E2_1473 - hypothetical protein, at 1,723,916 to 1,724,077
_1473
Pf6N2E2_1474 - SAM-dependent methyltransferases, at 1,724,101 to 1,724,697
_1474
Pf6N2E2_1475 - Arsenic resistance protein ArsH, at 1,725,024 to 1,725,758
_1475
Position (kb)
1724
1725 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1723.123 kb on - strand at 1723.140 kb on - strand, within Pf6N2E2_1472 at 1723.201 kb on + strand, within Pf6N2E2_1472 at 1723.202 kb on - strand, within Pf6N2E2_1472 at 1723.214 kb on + strand at 1723.215 kb on - strand, within Pf6N2E2_1472 at 1723.215 kb on - strand, within Pf6N2E2_1472 at 1723.346 kb on + strand, within Pf6N2E2_1472 at 1723.550 kb on + strand, within Pf6N2E2_1472 at 1723.550 kb on + strand, within Pf6N2E2_1472 at 1723.550 kb on + strand, within Pf6N2E2_1472 at 1723.550 kb on + strand, within Pf6N2E2_1472 at 1723.551 kb on - strand, within Pf6N2E2_1472 at 1723.768 kb on - strand at 1723.806 kb on - strand at 1723.881 kb on - strand at 1724.003 kb on + strand, within Pf6N2E2_1473 at 1724.003 kb on + strand, within Pf6N2E2_1473 at 1724.113 kb on - strand at 1724.328 kb on - strand, within Pf6N2E2_1474 at 1724.328 kb on - strand, within Pf6N2E2_1474 at 1724.328 kb on - strand, within Pf6N2E2_1474 at 1724.328 kb on - strand, within Pf6N2E2_1474 at 1724.334 kb on - strand, within Pf6N2E2_1474 at 1724.334 kb on - strand, within Pf6N2E2_1474 at 1724.372 kb on - strand, within Pf6N2E2_1474 at 1724.395 kb on + strand, within Pf6N2E2_1474 at 1724.396 kb on - strand, within Pf6N2E2_1474 at 1724.396 kb on - strand, within Pf6N2E2_1474 at 1724.434 kb on + strand, within Pf6N2E2_1474 at 1724.459 kb on + strand, within Pf6N2E2_1474 at 1724.459 kb on + strand, within Pf6N2E2_1474 at 1724.460 kb on - strand, within Pf6N2E2_1474 at 1724.460 kb on - strand, within Pf6N2E2_1474 at 1724.460 kb on - strand, within Pf6N2E2_1474 at 1724.460 kb on - strand, within Pf6N2E2_1474 at 1724.560 kb on - strand, within Pf6N2E2_1474 at 1724.560 kb on - strand, within Pf6N2E2_1474 at 1724.760 kb on - strand at 1724.800 kb on - strand at 1724.848 kb on + strand at 1725.022 kb on + strand at 1725.023 kb on - strand at 1725.023 kb on - strand at 1725.023 kb on - strand at 1725.088 kb on + strand at 1725.089 kb on - strand at 1725.131 kb on + strand, within Pf6N2E2_1475 at 1725.131 kb on + strand, within Pf6N2E2_1475 at 1725.132 kb on - strand, within Pf6N2E2_1475 at 1725.143 kb on - strand, within Pf6N2E2_1475 at 1725.148 kb on + strand, within Pf6N2E2_1475 at 1725.148 kb on + strand, within Pf6N2E2_1475 at 1725.149 kb on - strand, within Pf6N2E2_1475 at 1725.153 kb on + strand, within Pf6N2E2_1475 at 1725.153 kb on + strand, within Pf6N2E2_1475 at 1725.153 kb on + strand, within Pf6N2E2_1475 at 1725.153 kb on + strand, within Pf6N2E2_1475 at 1725.153 kb on + strand, within Pf6N2E2_1475 at 1725.463 kb on + strand, within Pf6N2E2_1475 at 1725.464 kb on - strand, within Pf6N2E2_1475 at 1725.464 kb on - strand, within Pf6N2E2_1475 at 1725.613 kb on - strand, within Pf6N2E2_1475 at 1725.613 kb on - strand, within Pf6N2E2_1475 at 1725.681 kb on + strand, within Pf6N2E2_1475 at 1725.681 kb on + strand, within Pf6N2E2_1475 at 1725.681 kb on + strand, within Pf6N2E2_1475 at 1725.681 kb on + strand, within Pf6N2E2_1475 at 1725.681 kb on + strand, within Pf6N2E2_1475 at 1725.681 kb on + strand, within Pf6N2E2_1475
Per-strain Table
Position Strand Gene LocusTag Fraction antimonate 0.005 M remove 1,723,123 - -1.4 1,723,140 - Pf6N2E2_1472 0.10 -0.9 1,723,201 + Pf6N2E2_1472 0.21 -0.5 1,723,202 - Pf6N2E2_1472 0.21 -1.9 1,723,214 + +1.5 1,723,215 - Pf6N2E2_1472 0.24 +1.2 1,723,215 - Pf6N2E2_1472 0.24 -0.8 1,723,346 + Pf6N2E2_1472 0.47 +1.5 1,723,550 + Pf6N2E2_1472 0.84 -0.7 1,723,550 + Pf6N2E2_1472 0.84 +1.5 1,723,550 + Pf6N2E2_1472 0.84 -1.8 1,723,550 + Pf6N2E2_1472 0.84 +0.0 1,723,551 - Pf6N2E2_1472 0.85 +3.5 1,723,768 - -1.1 1,723,806 - -0.1 1,723,881 - -1.6 1,724,003 + Pf6N2E2_1473 0.54 +0.5 1,724,003 + Pf6N2E2_1473 0.54 -0.1 1,724,113 - -0.1 1,724,328 - Pf6N2E2_1474 0.38 -0.3 1,724,328 - Pf6N2E2_1474 0.38 +0.3 1,724,328 - Pf6N2E2_1474 0.38 -0.3 1,724,328 - Pf6N2E2_1474 0.38 -0.3 1,724,334 - Pf6N2E2_1474 0.39 -1.7 1,724,334 - Pf6N2E2_1474 0.39 -1.7 1,724,372 - Pf6N2E2_1474 0.45 -1.0 1,724,395 + Pf6N2E2_1474 0.49 -1.3 1,724,396 - Pf6N2E2_1474 0.49 -0.1 1,724,396 - Pf6N2E2_1474 0.49 -1.7 1,724,434 + Pf6N2E2_1474 0.56 -0.1 1,724,459 + Pf6N2E2_1474 0.60 +0.1 1,724,459 + Pf6N2E2_1474 0.60 -0.9 1,724,460 - Pf6N2E2_1474 0.60 -0.9 1,724,460 - Pf6N2E2_1474 0.60 +0.5 1,724,460 - Pf6N2E2_1474 0.60 -1.0 1,724,460 - Pf6N2E2_1474 0.60 -2.0 1,724,560 - Pf6N2E2_1474 0.77 +0.7 1,724,560 - Pf6N2E2_1474 0.77 -3.2 1,724,760 - -1.7 1,724,800 - -0.1 1,724,848 + -2.6 1,725,022 + +1.5 1,725,023 - +1.5 1,725,023 - -1.3 1,725,023 - -1.7 1,725,088 + -1.1 1,725,089 - -2.2 1,725,131 + Pf6N2E2_1475 0.15 -2.4 1,725,131 + Pf6N2E2_1475 0.15 -1.7 1,725,132 - Pf6N2E2_1475 0.15 -0.5 1,725,143 - Pf6N2E2_1475 0.16 -2.7 1,725,148 + Pf6N2E2_1475 0.17 -1.6 1,725,148 + Pf6N2E2_1475 0.17 -3.8 1,725,149 - Pf6N2E2_1475 0.17 -0.5 1,725,153 + Pf6N2E2_1475 0.18 -1.5 1,725,153 + Pf6N2E2_1475 0.18 -1.1 1,725,153 + Pf6N2E2_1475 0.18 -1.9 1,725,153 + Pf6N2E2_1475 0.18 +0.5 1,725,153 + Pf6N2E2_1475 0.18 -1.3 1,725,463 + Pf6N2E2_1475 0.60 -0.5 1,725,464 - Pf6N2E2_1475 0.60 -2.0 1,725,464 - Pf6N2E2_1475 0.60 -3.5 1,725,613 - Pf6N2E2_1475 0.80 -0.9 1,725,613 - Pf6N2E2_1475 0.80 -2.5 1,725,681 + Pf6N2E2_1475 0.89 -0.1 1,725,681 + Pf6N2E2_1475 0.89 -2.2 1,725,681 + Pf6N2E2_1475 0.89 -0.5 1,725,681 + Pf6N2E2_1475 0.89 -2.4 1,725,681 + Pf6N2E2_1475 0.89 -2.1 1,725,681 + Pf6N2E2_1475 0.89 -2.1
Or see this region's nucleotide sequence