Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4024

Experiment: D-Glucose (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4022 and Ga0059261_4023 overlap by 4 nucleotidesGa0059261_4023 and Ga0059261_4024 overlap by 28 nucleotidesGa0059261_4024 and Ga0059261_4025 overlap by 4 nucleotidesGa0059261_4025 and Ga0059261_4026 overlap by 8 nucleotides Ga0059261_4022: Ga0059261_4022 - Signal transduction histidine kinase, at 4,139,490 to 4,141,757 _4022 Ga0059261_4023: Ga0059261_4023 - tRNA threonylcarbamoyl adenosine modification protein YjeE, at 4,141,754 to 4,142,200 _4023 Ga0059261_4024: Ga0059261_4024 - Predicted phosphotransferase related to Ser/Thr protein kinases, at 4,142,173 to 4,143,165 _4024 Ga0059261_4025: Ga0059261_4025 - Nucleotidyl transferase, at 4,143,162 to 4,143,923 _4025 Ga0059261_4026: Ga0059261_4026 - double-strand break repair protein AddB, alphaproteobacterial type, at 4,143,916 to 4,146,861 _4026 Position (kb) 4142 4143 4144Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4141.179 kb on + strand, within Ga0059261_4022at 4141.214 kb on + strand, within Ga0059261_4022at 4141.511 kb on + strand, within Ga0059261_4022at 4141.751 kb on + strandat 4141.751 kb on + strandat 4142.221 kb on + strandat 4142.422 kb on + strand, within Ga0059261_4024at 4142.524 kb on + strand, within Ga0059261_4024at 4142.524 kb on + strand, within Ga0059261_4024at 4142.524 kb on + strand, within Ga0059261_4024at 4142.524 kb on + strand, within Ga0059261_4024at 4142.524 kb on + strand, within Ga0059261_4024at 4142.524 kb on + strand, within Ga0059261_4024at 4142.524 kb on + strand, within Ga0059261_4024at 4142.602 kb on + strand, within Ga0059261_4024at 4142.602 kb on + strand, within Ga0059261_4024at 4142.602 kb on + strand, within Ga0059261_4024at 4142.635 kb on + strand, within Ga0059261_4024at 4142.674 kb on + strand, within Ga0059261_4024at 4142.743 kb on + strand, within Ga0059261_4024at 4142.743 kb on + strand, within Ga0059261_4024at 4142.830 kb on + strand, within Ga0059261_4024at 4142.830 kb on + strand, within Ga0059261_4024at 4142.947 kb on + strand, within Ga0059261_4024at 4142.947 kb on + strand, within Ga0059261_4024at 4143.058 kb on + strand, within Ga0059261_4024at 4143.059 kb on - strand, within Ga0059261_4024at 4143.120 kb on + strandat 4143.120 kb on + strandat 4143.378 kb on + strand, within Ga0059261_4025at 4143.378 kb on + strand, within Ga0059261_4025at 4143.378 kb on + strand, within Ga0059261_4025at 4143.837 kb on + strand, within Ga0059261_4025at 4143.943 kb on + strandat 4143.943 kb on + strandat 4143.943 kb on + strandat 4143.943 kb on + strandat 4143.943 kb on + strandat 4143.943 kb on + strandat 4143.943 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) and 0.25mM L-Methionine; no added vitamins
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4,141,179 + Ga0059261_4022 0.74 +1.7
4,141,214 + Ga0059261_4022 0.76 +1.0
4,141,511 + Ga0059261_4022 0.89 +0.1
4,141,751 + -1.1
4,141,751 + +0.2
4,142,221 + -0.6
4,142,422 + Ga0059261_4024 0.25 -1.6
4,142,524 + Ga0059261_4024 0.35 -0.6
4,142,524 + Ga0059261_4024 0.35 -0.7
4,142,524 + Ga0059261_4024 0.35 -1.0
4,142,524 + Ga0059261_4024 0.35 -1.1
4,142,524 + Ga0059261_4024 0.35 +0.9
4,142,524 + Ga0059261_4024 0.35 -1.1
4,142,524 + Ga0059261_4024 0.35 -0.1
4,142,602 + Ga0059261_4024 0.43 +0.3
4,142,602 + Ga0059261_4024 0.43 -2.0
4,142,602 + Ga0059261_4024 0.43 -1.6
4,142,635 + Ga0059261_4024 0.47 +0.3
4,142,674 + Ga0059261_4024 0.50 -1.3
4,142,743 + Ga0059261_4024 0.57 +1.1
4,142,743 + Ga0059261_4024 0.57 +0.6
4,142,830 + Ga0059261_4024 0.66 +0.2
4,142,830 + Ga0059261_4024 0.66 -4.1
4,142,947 + Ga0059261_4024 0.78 -2.2
4,142,947 + Ga0059261_4024 0.78 +0.5
4,143,058 + Ga0059261_4024 0.89 -0.1
4,143,059 - Ga0059261_4024 0.89 -0.5
4,143,120 + -0.1
4,143,120 + -0.3
4,143,378 + Ga0059261_4025 0.28 -1.1
4,143,378 + Ga0059261_4025 0.28 +0.0
4,143,378 + Ga0059261_4025 0.28 +0.9
4,143,837 + Ga0059261_4025 0.89 -0.4
4,143,943 + +0.1
4,143,943 + -0.0
4,143,943 + -0.8
4,143,943 + -0.3
4,143,943 + +0.5
4,143,943 + +0.0
4,143,943 + +0.7

Or see this region's nucleotide sequence