Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0138

Experiment: D-Glucose (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0137 and Ga0059261_0138 overlap by 4 nucleotidesGa0059261_0138 and Ga0059261_0139 are separated by 2 nucleotides Ga0059261_0137: Ga0059261_0137 - nitrogen regulation protein NR(I), at 131,148 to 132,593 _0137 Ga0059261_0138: Ga0059261_0138 - hypothetical protein, at 132,590 to 132,841 _0138 Ga0059261_0139: Ga0059261_0139 - Signal transduction histidine kinase, nitrogen specific, at 132,844 to 133,956 _0139 Position (kb) 132 133Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 131.698 kb on + strand, within Ga0059261_0137at 131.698 kb on + strand, within Ga0059261_0137at 132.142 kb on + strand, within Ga0059261_0137at 132.143 kb on - strand, within Ga0059261_0137at 132.143 kb on - strand, within Ga0059261_0137at 132.192 kb on + strand, within Ga0059261_0137at 132.289 kb on + strand, within Ga0059261_0137at 132.289 kb on + strand, within Ga0059261_0137at 132.290 kb on - strand, within Ga0059261_0137at 132.290 kb on - strandat 132.374 kb on - strand, within Ga0059261_0137at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strandat 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strandat 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strandat 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.742 kb on - strand, within Ga0059261_0138at 132.786 kb on + strand, within Ga0059261_0138at 132.786 kb on + strand, within Ga0059261_0138at 132.786 kb on + strand, within Ga0059261_0138at 132.787 kb on - strand, within Ga0059261_0138at 132.787 kb on - strand, within Ga0059261_0138at 132.827 kb on - strandat 132.841 kb on + strandat 132.841 kb on + strandat 132.841 kb on + strandat 132.841 kb on + strandat 132.842 kb on - strandat 132.908 kb on + strandat 132.908 kb on + strandat 132.934 kb on + strandat 132.934 kb on + strandat 132.935 kb on - strandat 132.935 kb on - strandat 132.935 kb on - strandat 133.118 kb on + strandat 133.119 kb on - strand, within Ga0059261_0139at 133.119 kb on - strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.320 kb on - strand, within Ga0059261_0139at 133.320 kb on - strand, within Ga0059261_0139at 133.320 kb on - strand, within Ga0059261_0139at 133.320 kb on - strand, within Ga0059261_0139at 133.541 kb on - strand, within Ga0059261_0139at 133.742 kb on + strand, within Ga0059261_0139at 133.743 kb on - strand, within Ga0059261_0139at 133.764 kb on + strand, within Ga0059261_0139at 133.800 kb on + strand, within Ga0059261_0139at 133.800 kb on + strand, within Ga0059261_0139at 133.800 kb on + strandat 133.800 kb on + strand, within Ga0059261_0139at 133.801 kb on - strand, within Ga0059261_0139at 133.837 kb on + strand, within Ga0059261_0139at 133.837 kb on + strand, within Ga0059261_0139at 133.838 kb on - strand, within Ga0059261_0139

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) and 0.25mM L-Methionine; no added vitamins
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131,698 + Ga0059261_0137 0.38 -1.0
131,698 + Ga0059261_0137 0.38 -1.7
132,142 + Ga0059261_0137 0.69 -2.9
132,143 - Ga0059261_0137 0.69 -2.5
132,143 - Ga0059261_0137 0.69 -2.2
132,192 + Ga0059261_0137 0.72 -0.7
132,289 + Ga0059261_0137 0.79 -1.3
132,289 + Ga0059261_0137 0.79 -3.2
132,290 - Ga0059261_0137 0.79 -1.4
132,290 - -1.8
132,374 - Ga0059261_0137 0.85 -1.0
132,633 + Ga0059261_0138 0.17 -2.8
132,633 + Ga0059261_0138 0.17 -0.9
132,633 + Ga0059261_0138 0.17 -1.5
132,633 + Ga0059261_0138 0.17 -1.4
132,633 + Ga0059261_0138 0.17 -0.5
132,633 + Ga0059261_0138 0.17 -1.8
132,633 + Ga0059261_0138 0.17 -2.3
132,633 + Ga0059261_0138 0.17 -0.1
132,633 + Ga0059261_0138 0.17 -1.9
132,633 + Ga0059261_0138 0.17 -1.1
132,633 + Ga0059261_0138 0.17 -3.7
132,633 + -0.5
132,633 + Ga0059261_0138 0.17 -2.4
132,633 + Ga0059261_0138 0.17 -1.1
132,633 + Ga0059261_0138 0.17 -2.5
132,633 + Ga0059261_0138 0.17 -1.3
132,634 - Ga0059261_0138 0.17 +0.9
132,634 - Ga0059261_0138 0.17 -0.0
132,634 - Ga0059261_0138 0.17 +0.8
132,634 - Ga0059261_0138 0.17 -0.8
132,634 - Ga0059261_0138 0.17 -1.8
132,634 - Ga0059261_0138 0.17 -0.7
132,634 - Ga0059261_0138 0.17 +0.5
132,634 - Ga0059261_0138 0.17 -0.3
132,634 - Ga0059261_0138 0.17 -0.2
132,634 - Ga0059261_0138 0.17 +0.2
132,634 - Ga0059261_0138 0.17 -0.8
132,634 - Ga0059261_0138 0.17 -1.0
132,634 - Ga0059261_0138 0.17 -0.3
132,634 - Ga0059261_0138 0.17 -0.2
132,634 - Ga0059261_0138 0.17 -0.8
132,693 + Ga0059261_0138 0.41 -0.9
132,693 + Ga0059261_0138 0.41 -2.0
132,693 + Ga0059261_0138 0.41 -3.0
132,693 + Ga0059261_0138 0.41 -2.3
132,693 + Ga0059261_0138 0.41 -1.4
132,693 + Ga0059261_0138 0.41 -2.1
132,693 + Ga0059261_0138 0.41 +1.0
132,693 + Ga0059261_0138 0.41 -1.6
132,693 + Ga0059261_0138 0.41 -1.2
132,693 + Ga0059261_0138 0.41 -2.8
132,693 + Ga0059261_0138 0.41 -1.1
132,693 + Ga0059261_0138 0.41 +0.5
132,693 + Ga0059261_0138 0.41 -0.1
132,693 + Ga0059261_0138 0.41 -2.1
132,693 + Ga0059261_0138 0.41 -0.9
132,693 + Ga0059261_0138 0.41 -2.1
132,693 + Ga0059261_0138 0.41 -2.0
132,693 + -0.7
132,694 - Ga0059261_0138 0.41 +0.4
132,694 - Ga0059261_0138 0.41 +0.1
132,694 - Ga0059261_0138 0.41 +0.6
132,694 - Ga0059261_0138 0.41 +0.4
132,694 - Ga0059261_0138 0.41 +0.5
132,694 - Ga0059261_0138 0.41 +0.5
132,694 - Ga0059261_0138 0.41 +0.0
132,694 - Ga0059261_0138 0.41 -0.9
132,694 - -0.8
132,694 - Ga0059261_0138 0.41 -0.2
132,694 - Ga0059261_0138 0.41 -0.1
132,742 - Ga0059261_0138 0.60 -0.3
132,786 + Ga0059261_0138 0.78 +1.2
132,786 + Ga0059261_0138 0.78 -0.9
132,786 + Ga0059261_0138 0.78 -4.8
132,787 - Ga0059261_0138 0.78 +0.8
132,787 - Ga0059261_0138 0.78 -1.0
132,827 - -0.1
132,841 + -3.5
132,841 + -2.3
132,841 + -3.3
132,841 + -1.0
132,842 - -0.7
132,908 + -2.4
132,908 + -0.7
132,934 + -1.6
132,934 + -1.2
132,935 - -1.6
132,935 - -1.4
132,935 - -3.2
133,118 + -2.4
133,119 - Ga0059261_0139 0.25 -2.3
133,119 - Ga0059261_0139 0.25 -4.1
133,319 + Ga0059261_0139 0.43 -2.1
133,319 + Ga0059261_0139 0.43 -1.8
133,319 + Ga0059261_0139 0.43 -3.4
133,319 + Ga0059261_0139 0.43 -1.7
133,319 + Ga0059261_0139 0.43 +0.1
133,319 + Ga0059261_0139 0.43 -0.2
133,319 + Ga0059261_0139 0.43 -2.9
133,319 + Ga0059261_0139 0.43 -0.4
133,319 + Ga0059261_0139 0.43 -1.5
133,319 + Ga0059261_0139 0.43 -3.2
133,320 - Ga0059261_0139 0.43 -0.5
133,320 - Ga0059261_0139 0.43 -1.0
133,320 - Ga0059261_0139 0.43 -2.9
133,320 - Ga0059261_0139 0.43 -3.1
133,541 - Ga0059261_0139 0.63 -1.4
133,742 + Ga0059261_0139 0.81 -1.2
133,743 - Ga0059261_0139 0.81 -0.8
133,764 + Ga0059261_0139 0.83 -2.2
133,800 + Ga0059261_0139 0.86 -2.3
133,800 + Ga0059261_0139 0.86 -3.3
133,800 + -1.7
133,800 + Ga0059261_0139 0.86 -2.9
133,801 - Ga0059261_0139 0.86 +0.0
133,837 + Ga0059261_0139 0.89 -2.6
133,837 + Ga0059261_0139 0.89 -1.8
133,838 - Ga0059261_0139 0.89 -2.5

Or see this region's nucleotide sequence