Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06010

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06005 and BWI76_RS06010 are separated by 11 nucleotidesBWI76_RS06010 and BWI76_RS06015 are separated by 46 nucleotidesBWI76_RS06015 and BWI76_RS06020 are separated by 76 nucleotides BWI76_RS06005: BWI76_RS06005 - ethanolamine ammonia lyase large subunit, at 1,259,737 to 1,261,125 _RS06005 BWI76_RS06010: BWI76_RS06010 - ethanolamine permease, at 1,261,137 to 1,262,516 _RS06010 BWI76_RS06015: BWI76_RS06015 - hypothetical protein, at 1,262,563 to 1,262,748 _RS06015 BWI76_RS06020: BWI76_RS06020 - glycoside hydrolase, at 1,262,825 to 1,264,207 _RS06020 Position (kb) 1261 1262 1263Strain fitness (log2 ratio) -3 -2 -1 0 1at 1260.261 kb on - strand, within BWI76_RS06005at 1260.468 kb on + strand, within BWI76_RS06005at 1260.500 kb on - strand, within BWI76_RS06005at 1260.517 kb on - strand, within BWI76_RS06005at 1260.517 kb on - strand, within BWI76_RS06005at 1260.557 kb on - strand, within BWI76_RS06005at 1260.578 kb on + strand, within BWI76_RS06005at 1260.662 kb on + strand, within BWI76_RS06005at 1260.801 kb on + strand, within BWI76_RS06005at 1260.922 kb on - strand, within BWI76_RS06005at 1261.115 kb on + strandat 1261.663 kb on - strand, within BWI76_RS06010at 1261.860 kb on - strand, within BWI76_RS06010at 1261.877 kb on - strand, within BWI76_RS06010at 1261.916 kb on + strand, within BWI76_RS06010at 1262.066 kb on + strand, within BWI76_RS06010at 1262.074 kb on - strand, within BWI76_RS06010at 1262.074 kb on - strand, within BWI76_RS06010at 1262.261 kb on + strand, within BWI76_RS06010at 1262.261 kb on + strand, within BWI76_RS06010at 1262.261 kb on + strand, within BWI76_RS06010at 1262.549 kb on - strandat 1262.643 kb on + strand, within BWI76_RS06015at 1262.646 kb on - strand, within BWI76_RS06015at 1262.749 kb on - strandat 1262.788 kb on - strandat 1262.790 kb on + strandat 1262.871 kb on + strandat 1262.926 kb on + strandat 1262.945 kb on - strandat 1263.051 kb on + strand, within BWI76_RS06020at 1263.088 kb on + strand, within BWI76_RS06020at 1263.127 kb on + strand, within BWI76_RS06020at 1263.135 kb on - strand, within BWI76_RS06020at 1263.135 kb on - strand, within BWI76_RS06020at 1263.135 kb on - strand, within BWI76_RS06020at 1263.183 kb on + strand, within BWI76_RS06020at 1263.376 kb on + strand, within BWI76_RS06020at 1263.397 kb on - strand, within BWI76_RS06020at 1263.408 kb on + strand, within BWI76_RS06020

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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1,260,261 - BWI76_RS06005 0.38 -2.6
1,260,468 + BWI76_RS06005 0.53 -0.5
1,260,500 - BWI76_RS06005 0.55 +0.2
1,260,517 - BWI76_RS06005 0.56 -0.6
1,260,517 - BWI76_RS06005 0.56 -3.4
1,260,557 - BWI76_RS06005 0.59 -1.0
1,260,578 + BWI76_RS06005 0.61 -2.5
1,260,662 + BWI76_RS06005 0.67 -1.9
1,260,801 + BWI76_RS06005 0.77 -2.5
1,260,922 - BWI76_RS06005 0.85 -1.0
1,261,115 + -2.5
1,261,663 - BWI76_RS06010 0.38 -1.5
1,261,860 - BWI76_RS06010 0.52 -0.1
1,261,877 - BWI76_RS06010 0.54 -0.2
1,261,916 + BWI76_RS06010 0.56 -1.4
1,262,066 + BWI76_RS06010 0.67 -2.0
1,262,074 - BWI76_RS06010 0.68 -1.4
1,262,074 - BWI76_RS06010 0.68 -2.9
1,262,261 + BWI76_RS06010 0.81 -2.2
1,262,261 + BWI76_RS06010 0.81 -1.3
1,262,261 + BWI76_RS06010 0.81 -1.1
1,262,549 - +0.3
1,262,643 + BWI76_RS06015 0.43 -2.5
1,262,646 - BWI76_RS06015 0.45 -3.2
1,262,749 - -1.2
1,262,788 - -1.0
1,262,790 + -1.0
1,262,871 + -0.6
1,262,926 + -0.2
1,262,945 - +0.3
1,263,051 + BWI76_RS06020 0.16 +0.4
1,263,088 + BWI76_RS06020 0.19 -0.2
1,263,127 + BWI76_RS06020 0.22 +0.5
1,263,135 - BWI76_RS06020 0.22 -1.1
1,263,135 - BWI76_RS06020 0.22 -0.2
1,263,135 - BWI76_RS06020 0.22 -2.6
1,263,183 + BWI76_RS06020 0.26 -0.3
1,263,376 + BWI76_RS06020 0.40 -1.1
1,263,397 - BWI76_RS06020 0.41 -0.2
1,263,408 + BWI76_RS06020 0.42 -0.2

Or see this region's nucleotide sequence