Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03880 and BPHYT_RS03885 are separated by 243 nucleotides BPHYT_RS03885 and BPHYT_RS03890 are separated by 93 nucleotides BPHYT_RS03890 and BPHYT_RS03895 are separated by 8 nucleotides BPHYT_RS03895 and BPHYT_RS03900 are separated by 353 nucleotides
BPHYT_RS03880: BPHYT_RS03880 - LysR family transcriptional regulator, at 880,330 to 881,310
_RS03880
BPHYT_RS03885: BPHYT_RS03885 - 2-hydroxychromene-2-carboxylate isomerase, at 881,554 to 882,204
_RS03885
BPHYT_RS03890: BPHYT_RS03890 - C4-dicarboxylate ABC transporter substrate-binding protein, at 882,298 to 883,791
_RS03890
BPHYT_RS03895: BPHYT_RS03895 - hypothetical protein, at 883,800 to 884,000
_RS03895
BPHYT_RS03900: BPHYT_RS03900 - phospholipid-binding protein, at 884,354 to 884,707
_RS03900
Position (kb) 882
883
884 Strain fitness (log2 ratio) -1
0
1
2 at 881.419 kb on + strand at 881.506 kb on + strand at 881.507 kb on - strand at 881.530 kb on - strand at 881.549 kb on - strand at 881.555 kb on + strand at 881.642 kb on + strand, within BPHYT_RS03885 at 881.643 kb on - strand, within BPHYT_RS03885 at 881.643 kb on - strand, within BPHYT_RS03885 at 881.739 kb on + strand, within BPHYT_RS03885 at 881.875 kb on + strand, within BPHYT_RS03885 at 881.875 kb on + strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 882.066 kb on - strand, within BPHYT_RS03885 at 882.145 kb on - strand at 882.204 kb on + strand at 882.204 kb on + strand at 882.205 kb on - strand at 882.248 kb on - strand at 882.261 kb on + strand at 882.303 kb on - strand at 882.657 kb on - strand, within BPHYT_RS03890 at 882.683 kb on + strand, within BPHYT_RS03890 at 882.684 kb on - strand, within BPHYT_RS03890 at 882.815 kb on + strand, within BPHYT_RS03890 at 883.082 kb on + strand, within BPHYT_RS03890 at 883.130 kb on + strand, within BPHYT_RS03890 at 883.397 kb on + strand, within BPHYT_RS03890 at 883.397 kb on + strand, within BPHYT_RS03890 at 883.398 kb on - strand, within BPHYT_RS03890 at 883.398 kb on - strand, within BPHYT_RS03890 at 883.574 kb on + strand, within BPHYT_RS03890 at 883.574 kb on + strand, within BPHYT_RS03890 at 883.575 kb on - strand, within BPHYT_RS03890 at 883.575 kb on - strand, within BPHYT_RS03890 at 883.888 kb on + strand, within BPHYT_RS03895 at 883.888 kb on + strand, within BPHYT_RS03895 at 883.888 kb on + strand, within BPHYT_RS03895 at 883.998 kb on + strand at 883.999 kb on - strand at 883.999 kb on - strand at 883.999 kb on - strand at 883.999 kb on - strand at 883.999 kb on - strand at 884.011 kb on + strand at 884.027 kb on + strand at 884.058 kb on + strand at 884.059 kb on - strand at 884.059 kb on - strand at 884.115 kb on + strand at 884.115 kb on + strand at 884.116 kb on - strand at 884.116 kb on - strand at 884.116 kb on - strand at 884.232 kb on + strand at 884.317 kb on + strand at 884.420 kb on + strand, within BPHYT_RS03900 at 884.706 kb on - strand at 884.706 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 881,419 + -1.4 881,506 + +0.1 881,507 - -0.8 881,530 - -0.2 881,549 - +0.0 881,555 + +0.2 881,642 + BPHYT_RS03885 0.14 +0.2 881,643 - BPHYT_RS03885 0.14 +0.2 881,643 - BPHYT_RS03885 0.14 +0.5 881,739 + BPHYT_RS03885 0.28 +1.8 881,875 + BPHYT_RS03885 0.49 +0.9 881,875 + BPHYT_RS03885 0.49 +1.0 881,967 - BPHYT_RS03885 0.63 +1.0 881,967 - BPHYT_RS03885 0.63 +0.3 881,967 - BPHYT_RS03885 0.63 -0.1 881,967 - BPHYT_RS03885 0.63 -0.7 882,066 - BPHYT_RS03885 0.79 -0.4 882,145 - +0.3 882,204 + +0.4 882,204 + -1.0 882,205 - +0.3 882,248 - +0.3 882,261 + +0.8 882,303 - -0.2 882,657 - BPHYT_RS03890 0.24 -0.8 882,683 + BPHYT_RS03890 0.26 -1.2 882,684 - BPHYT_RS03890 0.26 +0.3 882,815 + BPHYT_RS03890 0.35 +0.6 883,082 + BPHYT_RS03890 0.52 +0.4 883,130 + BPHYT_RS03890 0.56 -0.5 883,397 + BPHYT_RS03890 0.74 -0.8 883,397 + BPHYT_RS03890 0.74 -0.4 883,398 - BPHYT_RS03890 0.74 +0.3 883,398 - BPHYT_RS03890 0.74 -0.2 883,574 + BPHYT_RS03890 0.85 -0.8 883,574 + BPHYT_RS03890 0.85 -0.2 883,575 - BPHYT_RS03890 0.85 +0.2 883,575 - BPHYT_RS03890 0.85 -0.0 883,888 + BPHYT_RS03895 0.44 -0.1 883,888 + BPHYT_RS03895 0.44 +0.1 883,888 + BPHYT_RS03895 0.44 +0.2 883,998 + -1.2 883,999 - +0.1 883,999 - +0.4 883,999 - -0.8 883,999 - +0.1 883,999 - -0.6 884,011 + -0.6 884,027 + +0.5 884,058 + -0.9 884,059 - +0.8 884,059 - +0.2 884,115 + +0.4 884,115 + -0.5 884,116 - -0.2 884,116 - -0.4 884,116 - -0.5 884,232 + +0.5 884,317 + +1.0 884,420 + BPHYT_RS03900 0.19 +0.5 884,706 - -0.3 884,706 - +0.7
Or see this region's nucleotide sequence