Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16555

Experiment: Minimal media pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16550 and AO353_16555 are separated by 5 nucleotidesAO353_16555 and AO353_16560 are separated by 163 nucleotides AO353_16550: AO353_16550 - CTP synthase, at 3,676,918 to 3,678,549 _16550 AO353_16555: AO353_16555 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 3,678,555 to 3,679,400 _16555 AO353_16560: AO353_16560 - enolase, at 3,679,564 to 3,680,853 _16560 Position (kb) 3678 3679 3680Strain fitness (log2 ratio) -1 0 1at 3679.421 kb on + strandat 3679.421 kb on + strandat 3679.466 kb on + strandat 3679.466 kb on + strandat 3679.467 kb on - strandat 3679.528 kb on + strandat 3679.529 kb on - strandat 3680.335 kb on + strand, within AO353_16560

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH6
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3,679,421 + +1.5
3,679,421 + +0.8
3,679,466 + -0.7
3,679,466 + +0.3
3,679,467 - -0.2
3,679,528 + +0.2
3,679,529 - -1.5
3,680,335 + AO353_16560 0.60 -1.7

Or see this region's nucleotide sequence