Strain Fitness in Shewanella loihica PV-4 around Shew_3477

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3476 and Shew_3477 overlap by 30 nucleotidesShew_3477 and Shew_3478 are separated by 186 nucleotides Shew_3476: Shew_3476 - transporter DMT superfamily protein (RefSeq), at 4,162,947 to 4,163,834 _3476 Shew_3477: Shew_3477 - hypothetical protein (RefSeq), at 4,163,805 to 4,164,344 _3477 Shew_3478: Shew_3478 - N-acetylglutamate synthase (RefSeq), at 4,164,531 to 4,165,853 _3478 Position (kb) 4163 4164 4165Strain fitness (log2 ratio) -1 0 1at 4162.848 kb on + strandat 4162.856 kb on - strandat 4162.921 kb on + strandat 4163.023 kb on + strandat 4163.084 kb on - strand, within Shew_3476at 4163.170 kb on - strand, within Shew_3476at 4163.296 kb on + strand, within Shew_3476at 4163.755 kb on - strandat 4163.960 kb on + strand, within Shew_3477at 4164.097 kb on - strand, within Shew_3477at 4164.494 kb on + strandat 4164.494 kb on + strandat 4164.502 kb on - strandat 4164.502 kb on - strandat 4164.779 kb on - strand, within Shew_3478at 4164.809 kb on - strand, within Shew_3478at 4164.810 kb on - strand, within Shew_3478at 4164.908 kb on - strand, within Shew_3478at 4164.961 kb on + strand, within Shew_3478at 4165.107 kb on - strand, within Shew_3478at 4165.200 kb on + strand, within Shew_3478at 4165.266 kb on - strand, within Shew_3478

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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4,162,848 + +0.3
4,162,856 - +0.1
4,162,921 + +0.6
4,163,023 + +0.2
4,163,084 - Shew_3476 0.15 +0.0
4,163,170 - Shew_3476 0.25 -0.3
4,163,296 + Shew_3476 0.39 +0.0
4,163,755 - +0.1
4,163,960 + Shew_3477 0.29 -0.4
4,164,097 - Shew_3477 0.54 -0.3
4,164,494 + -0.5
4,164,494 + -1.2
4,164,502 - +0.1
4,164,502 - -1.5
4,164,779 - Shew_3478 0.19 -0.6
4,164,809 - Shew_3478 0.21 -0.0
4,164,810 - Shew_3478 0.21 +0.2
4,164,908 - Shew_3478 0.28 +0.5
4,164,961 + Shew_3478 0.33 +1.3
4,165,107 - Shew_3478 0.44 +0.4
4,165,200 + Shew_3478 0.51 +0.7
4,165,266 - Shew_3478 0.56 +0.1

Or see this region's nucleotide sequence