Strain Fitness in Shewanella loihica PV-4 around Shew_3226
Experiment: Furfuryl Alcohol 0.075 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Furfuryl Alcohol 0.075 vol% |
---|---|---|---|---|---|
remove | |||||
3,848,197 | + | Shew_3225 | 0.11 | +3.1 | |
3,848,753 | - | Shew_3225 | 0.70 | +2.9 | |
3,848,866 | + | Shew_3225 | 0.82 | +3.0 | |
3,848,956 | + | +3.1 | |||
3,848,956 | + | +2.9 | |||
3,849,099 | + | +0.0 | |||
3,849,306 | - | Shew_3226 | 0.16 | +0.6 | |
3,849,454 | - | Shew_3226 | 0.25 | -1.5 | |
3,849,551 | - | Shew_3226 | 0.31 | -0.8 | |
3,849,623 | + | Shew_3226 | 0.35 | -0.5 | |
3,849,681 | - | Shew_3226 | 0.39 | -0.1 | |
3,849,760 | - | Shew_3226 | 0.43 | -1.9 | |
3,850,232 | - | Shew_3226 | 0.72 | +0.1 | |
3,850,369 | - | Shew_3226 | 0.81 | -0.2 | |
3,850,593 | - | -0.0 | |||
3,850,798 | + | +0.8 | |||
3,851,264 | + | Shew_3227 | 0.21 | +0.2 | |
3,851,331 | - | Shew_3227 | 0.24 | -0.1 | |
3,851,475 | + | Shew_3227 | 0.30 | +0.4 | |
3,851,543 | + | Shew_3227 | 0.33 | -1.6 | |
3,851,546 | - | Shew_3227 | 0.33 | -0.8 | |
3,851,622 | + | Shew_3227 | 0.36 | +0.1 |
Or see this region's nucleotide sequence