Strain Fitness in Shewanella loihica PV-4 around Shew_3208
Experiment: Furfuryl Alcohol 0.075 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Furfuryl Alcohol 0.075 vol% |
---|---|---|---|---|---|
remove | |||||
3,826,027 | + | -0.7 | |||
3,826,133 | + | +0.1 | |||
3,826,366 | + | napG | Shew_3207 | 0.30 | -1.1 |
3,826,371 | + | napG | Shew_3207 | 0.30 | +0.6 |
3,826,372 | - | napG | Shew_3207 | 0.30 | +0.0 |
3,826,379 | - | napG | Shew_3207 | 0.31 | +1.2 |
3,826,414 | - | napG | Shew_3207 | 0.36 | +0.5 |
3,826,436 | + | napG | Shew_3207 | 0.39 | +0.2 |
3,826,474 | + | napG | Shew_3207 | 0.44 | +0.0 |
3,826,482 | - | napG | Shew_3207 | 0.45 | -0.3 |
3,826,482 | - | napG | Shew_3207 | 0.45 | -0.7 |
3,826,700 | - | napG | Shew_3207 | 0.75 | -0.1 |
3,826,776 | + | napG | Shew_3207 | 0.86 | -1.8 |
3,826,847 | + | -0.1 | |||
3,827,151 | + | napH | Shew_3208 | 0.30 | +0.1 |
3,827,398 | - | napH | Shew_3208 | 0.58 | -1.4 |
3,827,503 | - | napH | Shew_3208 | 0.69 | -0.1 |
3,827,505 | + | napH | Shew_3208 | 0.70 | +0.1 |
3,827,538 | - | napH | Shew_3208 | 0.73 | -1.6 |
3,827,615 | + | napH | Shew_3208 | 0.82 | -0.3 |
3,827,911 | - | Shew_3209 | 0.32 | +2.5 | |
3,827,969 | + | Shew_3209 | 0.46 | +0.9 | |
3,828,642 | + | -0.2 |
Or see this region's nucleotide sequence