Strain Fitness in Shewanella loihica PV-4 around Shew_3158

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3156 and Shew_3157 are separated by 10 nucleotidesShew_3157 and Shew_3158 overlap by 4 nucleotidesShew_3158 and Shew_3159 are separated by 14 nucleotides Shew_3156: Shew_3156 - hypothetical protein (RefSeq), at 3,757,647 to 3,758,111 _3156 Shew_3157: Shew_3157 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 3,758,122 to 3,758,814 _3157 Shew_3158: Shew_3158 - polysulphide reductase, NrfD (RefSeq), at 3,758,811 to 3,759,752 _3158 Shew_3159: Shew_3159 - uncharacterized FlgJ-related protein-like (RefSeq), at 3,759,767 to 3,760,828 _3159 Position (kb) 3758 3759 3760Strain fitness (log2 ratio) -3 -2 -1 0 1at 3757.878 kb on + strand, within Shew_3156at 3758.040 kb on + strand, within Shew_3156at 3758.056 kb on - strand, within Shew_3156at 3758.228 kb on - strand, within Shew_3157at 3758.416 kb on + strand, within Shew_3157at 3758.439 kb on - strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.449 kb on - strand, within Shew_3157at 3758.449 kb on - strand, within Shew_3157at 3758.449 kb on - strand, within Shew_3157at 3758.561 kb on + strand, within Shew_3157at 3758.569 kb on - strand, within Shew_3157at 3758.631 kb on - strand, within Shew_3157at 3758.631 kb on + strand, within Shew_3157at 3758.676 kb on - strand, within Shew_3157at 3759.383 kb on - strand, within Shew_3158at 3759.386 kb on + strand, within Shew_3158at 3759.392 kb on - strand, within Shew_3158at 3759.595 kb on + strand, within Shew_3158at 3759.626 kb on - strand, within Shew_3158at 3759.884 kb on + strand, within Shew_3159at 3760.016 kb on - strand, within Shew_3159at 3760.042 kb on - strand, within Shew_3159at 3760.068 kb on - strand, within Shew_3159at 3760.096 kb on + strand, within Shew_3159at 3760.198 kb on + strand, within Shew_3159at 3760.230 kb on + strand, within Shew_3159at 3760.334 kb on - strand, within Shew_3159at 3760.492 kb on + strand, within Shew_3159at 3760.749 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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3,757,878 + Shew_3156 0.50 -0.0
3,758,040 + Shew_3156 0.85 +0.3
3,758,056 - Shew_3156 0.88 +1.0
3,758,228 - Shew_3157 0.15 +0.5
3,758,416 + Shew_3157 0.42 -0.2
3,758,439 - Shew_3157 0.46 +0.3
3,758,441 + Shew_3157 0.46 +0.3
3,758,441 + Shew_3157 0.46 -0.1
3,758,441 + Shew_3157 0.46 -0.8
3,758,441 + Shew_3157 0.46 -0.3
3,758,441 + Shew_3157 0.46 -0.1
3,758,441 + Shew_3157 0.46 +0.0
3,758,441 + Shew_3157 0.46 -1.6
3,758,441 + Shew_3157 0.46 -0.1
3,758,449 - Shew_3157 0.47 +0.3
3,758,449 - Shew_3157 0.47 -1.4
3,758,449 - Shew_3157 0.47 -1.9
3,758,561 + Shew_3157 0.63 +1.3
3,758,569 - Shew_3157 0.65 -0.3
3,758,631 - Shew_3157 0.73 -0.3
3,758,631 + Shew_3157 0.73 -0.6
3,758,676 - Shew_3157 0.80 -1.1
3,759,383 - Shew_3158 0.61 +0.2
3,759,386 + Shew_3158 0.61 -0.2
3,759,392 - Shew_3158 0.62 -0.8
3,759,595 + Shew_3158 0.83 +0.5
3,759,626 - Shew_3158 0.87 +0.2
3,759,884 + Shew_3159 0.11 +0.2
3,760,016 - Shew_3159 0.23 -3.1
3,760,042 - Shew_3159 0.26 -1.1
3,760,068 - Shew_3159 0.28 -0.6
3,760,096 + Shew_3159 0.31 -0.1
3,760,198 + Shew_3159 0.41 +0.4
3,760,230 + Shew_3159 0.44 +0.9
3,760,334 - Shew_3159 0.53 -0.0
3,760,492 + Shew_3159 0.68 +0.5
3,760,749 - +0.3

Or see this region's nucleotide sequence