Strain Fitness in Shewanella loihica PV-4 around Shew_3157

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3155 and Shew_3156 are separated by 98 nucleotidesShew_3156 and Shew_3157 are separated by 10 nucleotidesShew_3157 and Shew_3158 overlap by 4 nucleotidesShew_3158 and Shew_3159 are separated by 14 nucleotides Shew_3155: Shew_3155 - hypothetical protein (RefSeq), at 3,757,039 to 3,757,548 _3155 Shew_3156: Shew_3156 - hypothetical protein (RefSeq), at 3,757,647 to 3,758,111 _3156 Shew_3157: Shew_3157 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 3,758,122 to 3,758,814 _3157 Shew_3158: Shew_3158 - polysulphide reductase, NrfD (RefSeq), at 3,758,811 to 3,759,752 _3158 Shew_3159: Shew_3159 - uncharacterized FlgJ-related protein-like (RefSeq), at 3,759,767 to 3,760,828 _3159 Position (kb) 3758 3759Strain fitness (log2 ratio) -3 -2 -1 0 1at 3757.122 kb on - strand, within Shew_3155at 3757.134 kb on - strand, within Shew_3155at 3757.143 kb on - strand, within Shew_3155at 3757.154 kb on - strand, within Shew_3155at 3757.193 kb on + strand, within Shew_3155at 3757.193 kb on + strand, within Shew_3155at 3757.243 kb on - strand, within Shew_3155at 3757.269 kb on + strand, within Shew_3155at 3757.277 kb on - strand, within Shew_3155at 3757.323 kb on + strand, within Shew_3155at 3757.333 kb on + strand, within Shew_3155at 3757.435 kb on - strand, within Shew_3155at 3757.519 kb on + strandat 3757.613 kb on - strandat 3757.878 kb on + strand, within Shew_3156at 3758.040 kb on + strand, within Shew_3156at 3758.056 kb on - strand, within Shew_3156at 3758.228 kb on - strand, within Shew_3157at 3758.416 kb on + strand, within Shew_3157at 3758.439 kb on - strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.441 kb on + strand, within Shew_3157at 3758.449 kb on - strand, within Shew_3157at 3758.449 kb on - strand, within Shew_3157at 3758.449 kb on - strand, within Shew_3157at 3758.561 kb on + strand, within Shew_3157at 3758.569 kb on - strand, within Shew_3157at 3758.631 kb on - strand, within Shew_3157at 3758.631 kb on + strand, within Shew_3157at 3758.676 kb on - strand, within Shew_3157at 3759.383 kb on - strand, within Shew_3158at 3759.386 kb on + strand, within Shew_3158at 3759.392 kb on - strand, within Shew_3158at 3759.595 kb on + strand, within Shew_3158at 3759.626 kb on - strand, within Shew_3158

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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3,757,122 - Shew_3155 0.16 +0.2
3,757,134 - Shew_3155 0.19 +0.7
3,757,143 - Shew_3155 0.20 -0.2
3,757,154 - Shew_3155 0.23 -0.2
3,757,193 + Shew_3155 0.30 -0.0
3,757,193 + Shew_3155 0.30 -0.0
3,757,243 - Shew_3155 0.40 +0.3
3,757,269 + Shew_3155 0.45 +0.6
3,757,277 - Shew_3155 0.47 -0.3
3,757,323 + Shew_3155 0.56 -2.9
3,757,333 + Shew_3155 0.58 +0.2
3,757,435 - Shew_3155 0.78 -0.1
3,757,519 + +0.8
3,757,613 - +0.5
3,757,878 + Shew_3156 0.50 -0.0
3,758,040 + Shew_3156 0.85 +0.3
3,758,056 - Shew_3156 0.88 +1.0
3,758,228 - Shew_3157 0.15 +0.5
3,758,416 + Shew_3157 0.42 -0.2
3,758,439 - Shew_3157 0.46 +0.3
3,758,441 + Shew_3157 0.46 +0.3
3,758,441 + Shew_3157 0.46 -0.1
3,758,441 + Shew_3157 0.46 -0.8
3,758,441 + Shew_3157 0.46 -0.3
3,758,441 + Shew_3157 0.46 -0.1
3,758,441 + Shew_3157 0.46 +0.0
3,758,441 + Shew_3157 0.46 -1.6
3,758,441 + Shew_3157 0.46 -0.1
3,758,449 - Shew_3157 0.47 +0.3
3,758,449 - Shew_3157 0.47 -1.4
3,758,449 - Shew_3157 0.47 -1.9
3,758,561 + Shew_3157 0.63 +1.3
3,758,569 - Shew_3157 0.65 -0.3
3,758,631 - Shew_3157 0.73 -0.3
3,758,631 + Shew_3157 0.73 -0.6
3,758,676 - Shew_3157 0.80 -1.1
3,759,383 - Shew_3158 0.61 +0.2
3,759,386 + Shew_3158 0.61 -0.2
3,759,392 - Shew_3158 0.62 -0.8
3,759,595 + Shew_3158 0.83 +0.5
3,759,626 - Shew_3158 0.87 +0.2

Or see this region's nucleotide sequence