Strain Fitness in Shewanella loihica PV-4 around Shew_3103

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3101 and Shew_3102 are separated by 294 nucleotidesShew_3102 and Shew_3103 are separated by 263 nucleotidesShew_3103 and Shew_3104 are separated by 13 nucleotidesShew_3104 and Shew_3105 are separated by 1 nucleotides Shew_3101: Shew_3101 - UspA domain-containing protein (RefSeq), at 3,681,687 to 3,682,118 _3101 Shew_3102: Shew_3102 - hypothetical protein (RefSeq), at 3,682,413 to 3,682,790 _3102 Shew_3103: Shew_3103 - aldehyde dehydrogenase (RefSeq), at 3,683,054 to 3,684,478 _3103 Shew_3104: Shew_3104 - TetR family transcriptional regulator (RefSeq), at 3,684,492 to 3,685,076 _3104 Shew_3105: Shew_3105 - LysR family transcriptional regulator (RefSeq), at 3,685,078 to 3,685,959 _3105 Position (kb) 3683 3684 3685Strain fitness (log2 ratio) -1 0 1at 3682.059 kb on - strand, within Shew_3101at 3682.059 kb on - strand, within Shew_3101at 3682.245 kb on - strandat 3682.425 kb on + strandat 3682.512 kb on + strand, within Shew_3102at 3682.565 kb on + strand, within Shew_3102at 3682.573 kb on - strand, within Shew_3102at 3682.573 kb on - strand, within Shew_3102at 3683.087 kb on + strandat 3683.273 kb on + strand, within Shew_3103at 3683.376 kb on - strand, within Shew_3103at 3683.623 kb on - strand, within Shew_3103at 3683.714 kb on - strand, within Shew_3103at 3683.714 kb on - strand, within Shew_3103at 3683.714 kb on - strand, within Shew_3103at 3683.804 kb on + strand, within Shew_3103at 3683.909 kb on + strand, within Shew_3103at 3683.959 kb on + strand, within Shew_3103at 3683.967 kb on - strand, within Shew_3103at 3684.077 kb on - strand, within Shew_3103at 3684.124 kb on - strand, within Shew_3103at 3684.752 kb on + strand, within Shew_3104at 3684.757 kb on + strand, within Shew_3104at 3684.773 kb on - strand, within Shew_3104at 3684.778 kb on - strand, within Shew_3104at 3684.778 kb on - strand, within Shew_3104at 3684.950 kb on + strand, within Shew_3104at 3684.963 kb on + strand, within Shew_3104at 3684.964 kb on + strand, within Shew_3104

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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3,682,059 - Shew_3101 0.86 +0.8
3,682,059 - Shew_3101 0.86 -0.1
3,682,245 - +0.5
3,682,425 + +0.4
3,682,512 + Shew_3102 0.26 +0.1
3,682,565 + Shew_3102 0.40 +0.0
3,682,573 - Shew_3102 0.42 +0.0
3,682,573 - Shew_3102 0.42 +0.1
3,683,087 + +0.4
3,683,273 + Shew_3103 0.15 +0.4
3,683,376 - Shew_3103 0.23 +1.1
3,683,623 - Shew_3103 0.40 +0.3
3,683,714 - Shew_3103 0.46 -0.0
3,683,714 - Shew_3103 0.46 +0.5
3,683,714 - Shew_3103 0.46 +0.4
3,683,804 + Shew_3103 0.53 -0.5
3,683,909 + Shew_3103 0.60 +0.1
3,683,959 + Shew_3103 0.64 -0.2
3,683,967 - Shew_3103 0.64 +0.7
3,684,077 - Shew_3103 0.72 -0.5
3,684,124 - Shew_3103 0.75 +1.5
3,684,752 + Shew_3104 0.44 +0.6
3,684,757 + Shew_3104 0.45 +0.6
3,684,773 - Shew_3104 0.48 -0.0
3,684,778 - Shew_3104 0.49 -0.0
3,684,778 - Shew_3104 0.49 -1.1
3,684,950 + Shew_3104 0.78 +0.2
3,684,963 + Shew_3104 0.81 -0.0
3,684,964 + Shew_3104 0.81 -0.0

Or see this region's nucleotide sequence