Strain Fitness in Shewanella loihica PV-4 around Shew_2972

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2970 and Shew_2971 are separated by 36 nucleotidesShew_2971 and Shew_2972 are separated by 361 nucleotidesShew_2972 and Shew_2973 are separated by 150 nucleotides Shew_2970: Shew_2970 - hypothetical protein (RefSeq), at 3,524,043 to 3,524,543 _2970 Shew_2971: Shew_2971 - hypothetical protein (RefSeq), at 3,524,580 to 3,524,981 _2971 Shew_2972: Shew_2972 - hypothetical protein (RefSeq), at 3,525,343 to 3,526,125 _2972 Shew_2973: Shew_2973 - endothelin-converting protein 1 (RefSeq), at 3,526,276 to 3,528,360 _2973 Position (kb) 3525 3526 3527Strain fitness (log2 ratio) -1 0 1at 3524.354 kb on + strand, within Shew_2970at 3524.430 kb on - strand, within Shew_2970at 3524.590 kb on + strandat 3524.815 kb on - strand, within Shew_2971at 3524.874 kb on - strand, within Shew_2971at 3524.913 kb on + strand, within Shew_2971at 3524.922 kb on + strand, within Shew_2971at 3524.990 kb on + strandat 3525.215 kb on + strandat 3525.640 kb on - strand, within Shew_2972at 3525.668 kb on + strand, within Shew_2972at 3525.905 kb on - strand, within Shew_2972at 3525.945 kb on + strand, within Shew_2972at 3526.329 kb on - strandat 3526.351 kb on - strandat 3526.436 kb on + strandat 3526.591 kb on - strand, within Shew_2973at 3526.645 kb on - strand, within Shew_2973at 3526.645 kb on - strand, within Shew_2973at 3526.666 kb on - strand, within Shew_2973at 3526.772 kb on - strand, within Shew_2973at 3526.971 kb on + strand, within Shew_2973

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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3,524,354 + Shew_2970 0.62 +0.6
3,524,430 - Shew_2970 0.77 -0.9
3,524,590 + -1.3
3,524,815 - Shew_2971 0.58 +0.2
3,524,874 - Shew_2971 0.73 +1.1
3,524,913 + Shew_2971 0.83 +0.2
3,524,922 + Shew_2971 0.85 +0.2
3,524,990 + -0.8
3,525,215 + -1.5
3,525,640 - Shew_2972 0.38 -0.4
3,525,668 + Shew_2972 0.42 +0.2
3,525,905 - Shew_2972 0.72 +0.3
3,525,945 + Shew_2972 0.77 +0.6
3,526,329 - -0.4
3,526,351 - +0.1
3,526,436 + -1.5
3,526,591 - Shew_2973 0.15 +0.2
3,526,645 - Shew_2973 0.18 +0.6
3,526,645 - Shew_2973 0.18 +0.1
3,526,666 - Shew_2973 0.19 -0.0
3,526,772 - Shew_2973 0.24 +0.2
3,526,971 + Shew_2973 0.33 -0.5

Or see this region's nucleotide sequence