Strain Fitness in Shewanella loihica PV-4 around Shew_2928

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2927 and Shew_2928 are separated by 146 nucleotidesShew_2928 and leuS are separated by 121 nucleotides Shew_2927: Shew_2927 - apolipoprotein N-acyltransferase (RefSeq), at 3,465,545 to 3,467,158 _2927 Shew_2928: Shew_2928 - hypothetical protein (RefSeq), at 3,467,305 to 3,467,805 _2928 Shew_2929: leuS - leucyl-tRNA synthetase (RefSeq), at 3,467,927 to 3,470,518 leuS Position (kb) 3467 3468Strain fitness (log2 ratio) -2 -1 0 1at 3467.293 kb on + strandat 3467.405 kb on + strand, within Shew_2928at 3467.553 kb on + strand, within Shew_2928at 3467.553 kb on + strand, within Shew_2928at 3467.555 kb on + strand, within Shew_2928at 3467.864 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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3,467,293 + -1.8
3,467,405 + Shew_2928 0.20 +0.2
3,467,553 + Shew_2928 0.50 +0.1
3,467,553 + Shew_2928 0.50 -0.8
3,467,555 + Shew_2928 0.50 -1.2
3,467,864 + +1.0

Or see this region's nucleotide sequence