Strain Fitness in Shewanella loihica PV-4 around Shew_2901

Experiment: Furfuryl Alcohol 0.075 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2900 and Shew_2901 are separated by 234 nucleotidesShew_2901 and Shew_2902 are separated by 143 nucleotides Shew_2900: Shew_2900 - hypothetical protein (RefSeq), at 3,438,008 to 3,439,999 _2900 Shew_2901: Shew_2901 - phosphoesterase, PA-phosphatase related (RefSeq), at 3,440,234 to 3,440,908 _2901 Shew_2902: Shew_2902 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,441,052 to 3,442,491 _2902 Position (kb) 3440 3441Strain fitness (log2 ratio) -1 0 1at 3439.596 kb on - strand, within Shew_2900at 3439.948 kb on + strandat 3440.516 kb on + strand, within Shew_2901at 3440.708 kb on + strand, within Shew_2901

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
remove
3,439,596 - Shew_2900 0.80 -1.0
3,439,948 + +1.0
3,440,516 + Shew_2901 0.42 +0.4
3,440,708 + Shew_2901 0.70 +0.8

Or see this region's nucleotide sequence