Experiment: Furfuryl Alcohol 0.075 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2795 and Shew_2796 are separated by 478 nucleotides Shew_2796 and Shew_2797 are separated by 30 nucleotides Shew_2797 and Shew_2798 are separated by 12 nucleotides
Shew_2795: Shew_2795 - xanthine/uracil/vitamin C permease (RefSeq), at 3,309,263 to 3,310,621
_2795
Shew_2796: Shew_2796 - periplasmic nitrate reductase NapE (RefSeq), at 3,311,100 to 3,311,300
_2796
Shew_2797: Shew_2797 - trimethylamine-N-oxide reductase c-type cytochrome TorC (RefSeq), at 3,311,331 to 3,312,509
_2797
Shew_2798: Shew_2798 - trimethylamine-N-oxide reductase TorA (RefSeq), at 3,312,522 to 3,315,008
_2798
Position (kb)
3311
3312
3313 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3310.607 kb on - strand at 3310.673 kb on + strand at 3310.681 kb on - strand at 3310.698 kb on + strand at 3311.087 kb on + strand at 3311.363 kb on + strand at 3311.394 kb on - strand at 3311.395 kb on + strand at 3311.512 kb on - strand, within Shew_2797 at 3312.088 kb on - strand, within Shew_2797 at 3312.340 kb on + strand, within Shew_2797 at 3312.389 kb on + strand, within Shew_2797 at 3312.787 kb on + strand, within Shew_2798 at 3312.787 kb on + strand, within Shew_2798 at 3312.795 kb on - strand, within Shew_2798 at 3312.883 kb on - strand, within Shew_2798 at 3312.983 kb on - strand, within Shew_2798 at 3313.085 kb on - strand, within Shew_2798 at 3313.123 kb on + strand, within Shew_2798 at 3313.156 kb on + strand, within Shew_2798 at 3313.342 kb on - strand, within Shew_2798
Per-strain Table
Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol% remove 3,310,607 - +0.8 3,310,673 + -0.4 3,310,681 - +0.5 3,310,698 + -3.2 3,311,087 + +1.0 3,311,363 + -0.0 3,311,394 - -0.6 3,311,395 + +0.2 3,311,512 - Shew_2797 0.15 -0.0 3,312,088 - Shew_2797 0.64 +0.2 3,312,340 + Shew_2797 0.86 +0.6 3,312,389 + Shew_2797 0.90 +0.6 3,312,787 + Shew_2798 0.11 +0.6 3,312,787 + Shew_2798 0.11 +0.8 3,312,795 - Shew_2798 0.11 +0.3 3,312,883 - Shew_2798 0.15 -2.2 3,312,983 - Shew_2798 0.19 +0.7 3,313,085 - Shew_2798 0.23 +0.4 3,313,123 + Shew_2798 0.24 +0.0 3,313,156 + Shew_2798 0.25 +1.5 3,313,342 - Shew_2798 0.33 +0.2
Or see this region's nucleotide sequence