Strain Fitness in Shewanella loihica PV-4 around Shew_2761

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2760 and Shew_2761 are separated by 176 nucleotidesShew_2761 and Shew_2762 are separated by 91 nucleotidesShew_2762 and Shew_2763 overlap by 8 nucleotides Shew_2760: Shew_2760 - isocitrate dehydrogenase (RefSeq), at 3,265,570 to 3,266,577 _2760 Shew_2761: Shew_2761 - putative RNA 2'-O-ribose methyltransferase (RefSeq), at 3,266,754 to 3,267,845 _2761 Shew_2762: Shew_2762 - hypothetical protein (RefSeq), at 3,267,937 to 3,268,326 _2762 Shew_2763: Shew_2763 - dienelactone hydrolase (RefSeq), at 3,268,319 to 3,269,041 _2763 Position (kb) 3266 3267 3268Strain fitness (log2 ratio) -2 -1 0 1 2at 3266.798 kb on - strandat 3266.998 kb on + strand, within Shew_2761at 3267.402 kb on + strand, within Shew_2761at 3267.567 kb on - strand, within Shew_2761at 3267.709 kb on - strand, within Shew_2761at 3267.900 kb on - strandat 3268.332 kb on - strandat 3268.392 kb on - strand, within Shew_2763at 3268.671 kb on + strand, within Shew_2763

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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3,266,798 - -0.0
3,266,998 + Shew_2761 0.22 +0.8
3,267,402 + Shew_2761 0.59 -1.1
3,267,567 - Shew_2761 0.74 -1.8
3,267,709 - Shew_2761 0.87 +0.7
3,267,900 - -1.6
3,268,332 - +0.3
3,268,392 - Shew_2763 0.10 -1.5
3,268,671 + Shew_2763 0.49 +2.0

Or see this region's nucleotide sequence