Strain Fitness in Shewanella loihica PV-4 around Shew_2235

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2233 and Shew_2234 are separated by 2 nucleotidesShew_2234 and Shew_2235 are separated by 222 nucleotidesShew_2235 and Shew_2236 are separated by 384 nucleotides Shew_2233: Shew_2233 - recombination protein RecR (RefSeq), at 2,610,691 to 2,611,290 _2233 Shew_2234: Shew_2234 - hypothetical protein (RefSeq), at 2,611,293 to 2,611,622 _2234 Shew_2235: Shew_2235 - DNA polymerase III, subunits gamma and tau (RefSeq), at 2,611,845 to 2,615,186 _2235 Shew_2236: Shew_2236 - adenine phosphoribosyltransferase (RefSeq), at 2,615,571 to 2,616,164 _2236 Position (kb) 2611 2612 2613 2614 2615 2616Strain fitness (log2 ratio) -1 0 1 2at 2615.357 kb on - strandat 2615.360 kb on + strandat 2615.383 kb on - strandat 2615.650 kb on - strand, within Shew_2236at 2615.796 kb on + strand, within Shew_2236at 2615.930 kb on + strand, within Shew_2236

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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2,615,357 - +0.2
2,615,360 + +0.5
2,615,383 - -0.5
2,615,650 - Shew_2236 0.13 +0.3
2,615,796 + Shew_2236 0.38 -0.0
2,615,930 + Shew_2236 0.60 +1.8

Or see this region's nucleotide sequence