Strain Fitness in Shewanella loihica PV-4 around Shew_2198

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthisG and Shew_2198 are separated by 4 nucleotidesShew_2198 and Shew_2199 are separated by 1 nucleotides Shew_2197: hisG - ATP phosphoribosyltransferase (RefSeq), at 2,557,577 to 2,558,476 hisG Shew_2198: Shew_2198 - histidinol dehydrogenase (RefSeq), at 2,558,481 to 2,559,812 _2198 Shew_2199: Shew_2199 - histidinol-phosphate aminotransferase (RefSeq), at 2,559,814 to 2,560,896 _2199 Position (kb) 2558 2559 2560Strain fitness (log2 ratio) -1 0 1 2at 2557.760 kb on + strand, within hisGat 2557.832 kb on + strand, within hisGat 2558.086 kb on + strand, within hisGat 2558.415 kb on + strandat 2558.423 kb on - strandat 2558.500 kb on + strandat 2558.802 kb on + strand, within Shew_2198at 2558.925 kb on + strand, within Shew_2198at 2559.023 kb on + strand, within Shew_2198at 2559.739 kb on + strandat 2559.826 kb on - strandat 2560.312 kb on + strand, within Shew_2199at 2560.511 kb on + strand, within Shew_2199at 2560.519 kb on - strand, within Shew_2199at 2560.638 kb on + strand, within Shew_2199

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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2,557,760 + hisG Shew_2197 0.20 +0.6
2,557,832 + hisG Shew_2197 0.28 +0.9
2,558,086 + hisG Shew_2197 0.57 +1.0
2,558,415 + -0.2
2,558,423 - +1.9
2,558,500 + -1.3
2,558,802 + Shew_2198 0.24 -0.9
2,558,925 + Shew_2198 0.33 -1.2
2,559,023 + Shew_2198 0.41 +0.9
2,559,739 + +0.7
2,559,826 - -0.9
2,560,312 + Shew_2199 0.46 -0.1
2,560,511 + Shew_2199 0.64 +1.5
2,560,519 - Shew_2199 0.65 -1.1
2,560,638 + Shew_2199 0.76 -0.9

Or see this region's nucleotide sequence